Man pages for bbuchsbaum/neighborweights
Constructing Adjacency Matrices Based on Spatial and Feature Similarity
| adjacency | get weights of all neighbors of a set of nodes |
| adjacency.neighbor_graph | Adjacency Matrix for neighbor_graph Objects |
| between_class_neighbors | Between-Class Neighbors |
| bilateral_smoother | Bilateral Spatial Smoother |
| binary_label_matrix | Create a Binary Label Adjacency Matrix |
| class_graph | Construct a Class Graph |
| class_means | Class Means |
| commute_time_distance | Compute the commute-time distance between nodes in a graph |
| convolve_matrix | Convolve a Data Matrix with a Kernel Matrix |
| cross_adjacency | Cross Adjacency |
| cross_spatial_adjacency | Cross Spatial Adjacency |
| cross_weighted_spatial_adjacency | Compute the adjacency between two adjacency matrices weighted... |
| difference_of_gauss | Compute the Difference of Gaussians for a coordinate matrix |
| discriminating_distance | Compute Discriminating Distance for Similarity Graph |
| discriminating_simililarity | Compute Similarity Graph Weighted by Class Structure |
| dist_to_sim | Convert distance to similarity |
| edges | Edges for Graph-Like Objects |
| edges.neighbor_graph | Edges for neighbor_graph Objects |
| estimate_sigma | Estimate Bandwidth Parameter (Sigma) for the Heat Kernel |
| expand_label_similarity | Expand Similarity Between Labels Based on a Precomputed... |
| factor_sim | Compute Similarity Matrix for Factors in a Data Frame |
| feature_weighted_spatial_constraints | Construct Feature-Weighted Spatial Constraints for Data... |
| find_nn | Find nearest neighbors |
| find_nn_among | Find nearest neighbors among a subset |
| find_nn_between | Find nearest neighbors between two sets of data points |
| graph_weights | Convert a Data Matrix to an Adjacency Graph |
| heat_kernel | Compute the Heat Kernel |
| inverse_heat_kernel | inverse_heat_kernel |
| label_matrix | Compute a Similarity or Distance Matrix for Categorical... |
| label_matrix2 | Create a Label Adjacency Matrix |
| laplacian | Compute Graph Laplacian of a Weight Matrix |
| laplacian.neighbor_graph | Laplacian Matrix for neighbor_graph Objects |
| make_doubly_stochastic | Compute the doubly stochastic matrix from a given matrix |
| nclasses | Number of Classes |
| neighbor_graph | Neighbor Graph |
| neighbor_graph.igraph | Neighbor Graph for igraph Objects |
| neighbor_graph.Matrix | Neighbor Graph for Matrix Objects |
| neighbors | Neighbors of a Set of Nodes |
| neighbors.neighbor_graph | Neighbors for neighbor_graph Objects |
| node_density.neighbor_graph | Node Density for neighbor_graph Objects |
| non_neighbors | get indices of the non-neighbors of a set of nodes |
| non_neighbors.neighbor_graph | Non-neighbors for neighbor_graph Objects |
| normalize_adjacency | Normalize Adjacency Matrix |
| normalized_heat_kernel | normalized_heat_kernel |
| nvertices | Number of Vertices in Graph-like Objects |
| pairwise_adjacency | Compute a pairwise adjacency matrix for multiple graphs |
| psparse | Apply a Function to Non-Zero Elements in a Sparse Matrix |
| repulsion_graph | This function creates a repulsion graph, which is a graph... |
| search_result | Search result for nearest neighbor search |
| spatial_adjacency | Compute the spatial adjacency matrix for a coordinate matrix |
| spatial_autocor | Compute a spatial autocorrelation matrix |
| spatial_constraints | Construct a Sparse Matrix of Spatial Constraints for Data... |
| spatial_laplacian | Compute the spatial Laplacian matrix of a coordinate matrix |
| spatial_lap_of_gauss | Compute the spatial Laplacian of Gaussian for a coordinate... |
| spatial_smoother | Compute the spatial smoother matrix for a coordinate matrix |
| temporal_adjacency | Compute the temporal adjacency matrix of a time series |
| temporal_autocor | Compute the temporal autocorrelation of a matrix |
| temporal_laplacian | Compute the temporal Laplacian matrix of a time series |
| threshold_adjacency | Threshold Adjacency |
| weighted_factor_sim | Compute Weighted Similarity Matrix for Factors in a Data... |
| weighted_knn | Weighted k-Nearest Neighbors |
| weighted_spatial_adjacency | Weighted Spatial Adjacency |
| within_class_neighbors | Within-Class Neighbors |
| within_class_neighbors.class_graph | Within-Class Neighbors for class_graph Objects |
