plot.glasser: Plot Glasser Atlas

In bbuchsbaum/neuroatlas: useful atlases/parcellations for neuroimaging analysis

Plot Glasser Atlas

Description

Creates an interactive visualization of the Glasser atlas with mapped values using ggseg and ggiraph.

Usage

## S3 method for class 'glasser'
plot(
  x,
  y,
  vals = NULL,
  thresh = c(0, 0),
  pos = FALSE,
  position = "stacked",
  colour = "gray",
  guide = TRUE,
  palette = "cork",
  lim = NULL,
  ...
)

Arguments

x	A Glasser atlas object
y	Ignored (required for compatibility with generic plot method)
vals	Numeric vector of values to visualize. If NULL (default), all regions will be assigned a value of 1, creating a uniform visualization
thresh	Numeric vector of length 2 for thresholding values
pos	Logical. If TRUE, uses raw values for thresholding
position	Character. Layout type ("stacked" or "dispersed")
colour	Character. Border color for regions
guide	Logical. Whether to show color guide
palette	Character. Name of scico color palette
lim	Numeric vector of length 2 for color scale limits. If NULL, will be set to range of vals
...	Additional arguments passed to methods

Value

A ggiraph interactive plot object

bbuchsbaum/neuroatlas documentation built on Dec. 24, 2024, 4:22 a.m.