vignettes/neuroim.md

In bbuchsbaum/neuroim: Data Structures and Handling for Neuroimaging Data

title: "The neuroim package" date: "r Sys.Date()" output: rmarkdown::html_vignette vignette: > %\VignetteIndexEntry{The neuroim package} %\VignetteEngine{knitr::rmarkdown} \usepackage[utf8]{inputenc}

{r, echo = FALSE, message = FALSE} knitr::opts_chunk$set(collapse = T, comment = "#>") library(neuroim)

The neuroim package

The neuroim package is a library of S4 classes and functions supporting neuroimaigng analysis in R. It contains data structures for 3D and 4D images and rotines for reading and writing NIFTI formatted images. It currently has experimental/limited support for reading AFNI formatted images.

A brief summary of most important functions is below. More extended documentation can be found in the associated vignettes.

loading an image volume

loadVolume

writing an image volume to disk

writeVolume

loading a 4-dimensional image (e.g. for fMRI)

loadVector

writing a 4-dimensional image (e.g. for fMRI)

writeVector

bbuchsbaum/neuroim documentation built on March 29, 2021, 11:01 a.m.