Layer: Class that encapsulates a layer used for dispalying slices of...

In bbuchsbaum/neuroviz: visualization of neuroimaging data

Description

Class that encapsulates a layer used for dispalying slices of a 3D volume.

Usage

Layer

Format

R6Class object.

Value

Object of R6Class with methods for accessing and changing layer properties.

Fields

vol

an object of class NeuroVol supplying the image data

color_map

the color map

threshold

the low and high thresholds to determine transparency.

irange

the intensity range of the low and high end of color scale.

view

the orientation code (e.g. "LPI") describing the display axes.

zero_col

the color assigned to values of 0.

alpha

the degree of opacity for the layer (0 = transparent, 1 = opaque)

view_space

the linkS4class{NeuroSpace} associaed with the view.

value_range

the full numeric range of the underlying volume

desc

a short character description of the layer

bbuchsbaum/neuroviz documentation built on May 28, 2019, 6:37 p.m.