bbuchsbaum/rMVPA
Multivoxel Pattern Analysis in R

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Search the bbuchsbaum/rMVPA package
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Functions
486
Source code
165
Man pages
127
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bbuchsbaum/rMVPA: Multivoxel Pattern Analysis in R
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API

API for bbuchsbaum/rMVPA
Multivoxel Pattern Analysis in R

Global functions
.get_samples Source code
.hash_row_indices Source code
.perm_test_feature_rsa Source code
.predict_glmnet Source code
.predict_pca Source code
.predict_scca Source code
.standardize Source code
MVPAModels Man page
`%||%` Source code
add_interaction_contrasts Man page Source code
as.data.frame.data_sample Source code
as_roi Man page Source code
as_roi.data_sample Source code
balance_partitions Man page Source code
balance_partitions.blocked_cross_validation Man page Source code
balance_partitions.bootstrap_blocked_cross_validation Man page Source code
balance_partitions.custom_cross_validation Man page Source code
balance_partitions.default Man page Source code
balance_partitions.kfold_cross_validation Man page Source code
balance_partitions.sequential_blocked_cross_validation Man page Source code
balance_partitions.twofold_blocked_cross_validation Man page Source code
balance_single_fold Source code
binary_classification_result Man page Source code
binary_perf Source code
blocked_cross_validation Man page Source code
bootstrap_blocked_cross_validation Man page Source code
calculate_log_posteriors Source code
check_collinearity Source code
check_len Source code
classification_result Man page Source code
coalesce_join Source code
coalesce_join2 Man page Source code
colHuber Source code
combine_custom_randomized Man page Source code
combine_custom_standard Man page Source code
combine_msreve_standard Man page
combine_prediction_tables Man page Source code
combine_randomized Man page
combine_regional_results Source code
combine_rsa_standard Man page
combine_standard Man page Source code
combine_vector_rsa_standard Man page
combinedACC Source code
comp_perf Source code
compute_crossnobis_distances_sl Source code
compute_crossvalidated_means_sl Man page Source code
compute_performance Man page Source code
compute_performance.mvpa_model Source code
compute_trial_scores Source code
contrast_rsa_model Man page Source code
contrasts Man page Source code
cordist Man page Source code
corsimFit Source code
create_dist Man page Source code
create_model_spec Source code
create_mvpa_folds Man page Source code
create_result_tibble Source code
create_searchlight_performance Man page Source code
crossv_block Man page Source code
crossv_bootstrap_block Man page Source code
crossv_k Man page Source code
crossv_seq_block Source code
crossv_twofold Source code
crossval_samples Man page Source code
crossval_samples.blocked_cross_validation Source code
crossval_samples.bootstrap_blocked_cross_validation Source code
crossval_samples.custom_cross_validation Source code
crossval_samples.kfold_cross_validation Source code
crossval_samples.mvpa_model Source code
crossval_samples.sequential_blocked_cross_validation Source code
crossval_samples.twofold_blocked_cross_validation Source code
custom_cross_validation Man page Source code
custom_performance Man page Source code
data_sample Man page Source code
data_sample.mvpa_dataset Man page Source code
do_merge_results Man page
do_randomized Man page
do_standard Man page
eucdist Man page Source code
evaluate_model.feature_rsa_model Man page Source code
evaluate_model.vector_rsa_model Man page Source code
external_crossval Source code
extract_roi Source code
feature_rsa_design Man page Source code
feature_rsa_model Man page Source code
feature_selection Man page
feature_selector Man page Source code
filter_roi Man page Source code
filter_roi.ROISurfaceVector Source code
filter_roi.ROIVec Source code
filter_roi.default Source code
fit_model Man page Source code
fit_model.mvpa_model Man page Source code
format_result Man page Source code
format_result.feature_rsa_model Source code
format_result.mvpa_model Source code
gen_id Source code
gen_sample_dataset Man page Source code
generate_crossval_samples Source code
get_binary_perf Source code
get_control Source code
get_custom_perf Source code
get_multiclass_perf Source code
get_nfolds Man page Source code
get_nfolds.blocked_cross_validation Source code
get_nfolds.bootstrap_blocked_cross_validation Source code
get_nfolds.custom_cross_validation Source code
get_nfolds.kfold_cross_validation Source code
get_nfolds.sequential_blocked_cross_validation Source code
get_nfolds.twofold_blocked_cross_validation Source code
get_regression_perf Source code
get_samples Man page Source code
get_samples.mvpa_dataset Source code
get_samples.mvpa_surface_dataset Source code
get_searchlight Man page Source code
get_searchlight.mvpa_image_dataset Source code
get_searchlight.mvpa_surface_dataset Source code
get_unique_regions Man page Source code
get_unique_regions.NeuroSurface Source code
get_unique_regions.NeuroVol Source code
group_means Man page Source code
handle_model_training_error Source code
has_crossval Man page Source code
has_crossval.default Source code
has_crossval.model_spec Source code
has_crossval.mvpa_model Source code
has_test_set Man page Source code
has_test_set.model_spec Source code
has_test_set.mvpa_dataset Source code
has_test_set.mvpa_design Source code
has_test_set.mvpa_model Source code
initialize_configuration Source code
initialize_crossval Source code
initialize_design Source code
initialize_feature_selection Source code
initialize_image_data Source code
initialize_standard_parameters Source code
initialize_surface_data Source code
initialize_tune_grid Source code
internal_crossval Source code
kendall_cor Source code
kfold_cross_validation Man page Source code
list_model Source code
load_design Source code
load_image_data Source code
load_image_data_series Source code
load_mask Source code
load_model Man page Source code
load_mvpa_model Source code
load_subset Source code
load_surface_data Source code
load_surface_mask Source code
mahadist Man page Source code
make_feature_contrasts Man page Source code
make_output_dir Source code
manova_design Man page Source code
manova_model Man page Source code
matrixAnova Source code
merge_classif_results Man page Source code
merge_predictions Man page Source code
merge_predictions.classification_prediction Source code
merge_predictions.regression_prediction Source code
merge_results Man page Source code
merge_results.binary_classification_result Source code
merge_results.feature_rsa_model Source code
merge_results.manova_model Man page Source code
merge_results.multiway_classification_result Source code
merge_results.mvpa_model Source code
merge_results.regional_mvpa_result Man page Source code
merge_results.regression_result Source code
merge_results.rsa_model Man page Source code
merge_results.vector_rsa_model Man page Source code
model_fit Source code
msreve_design Man page Source code
multiclass_perf Source code
multiway_classification_result Man page Source code
mvpa_dataset Man page Source code
mvpa_design Man page Source code
mvpa_iterate Man page Source code
mvpa_model Man page Source code
mvpa_surface_dataset Man page Source code
mvpa_sysinfo Man page Source code
na_cols Source code
new-analysis-overview Man page
nobs Man page Source code
nobs.mvpa_dataset Source code
nobs.mvpa_design Source code
nonzeroVarianceColumns Source code
nonzeroVarianceColumns2 Source code
normalize_image_samples Source code
normalize_surface_samples Source code
nresponses Man page Source code
nresponses.mvpa_design Source code
orthogonalize_contrasts Man page Source code
pairwise_dist Source code
pairwise_dist.cordist Source code
pairwise_dist.default Source code
pairwise_dist.euclidean Source code
pairwise_dist.mahalanobis Source code
pairwise_dist.pcadist Source code
pairwise_dist.robustmahadist Source code
parse_spec_to_metadata Source code
parse_variable Source code
pcadist Man page Source code
perform_balancing_on_cv_obj Source code
performance Man page Source code
performance.binary_classification_result Source code
performance.multiway_classification_result Source code
performance.regression_result Man page Source code
pool_randomized Man page
predict.class_model_fit Source code
predict.list_model Source code
predict.regression_model_fit Source code
predict.weighted_model Source code
predict_corsimFit Source code
predict_model Man page Source code
predict_model.feature_rsa_model Source code
predicted_class Man page Source code
prep_regional Man page Source code
print.binary_classification_result Source code
print.blocked_cross_validation Source code
print.bootstrap_blocked_cross_validation Source code
print.classification_result Source code
print.contrast_rsa_model Source code
print.data_sample Source code
print.feature_rsa_design Man page Source code
print.feature_rsa_model Man page Source code
print.feature_selector Source code
print.kfold_cross_validation Source code
print.manova_design Source code
print.manova_model Source code
print.msreve_design Source code
print.multiway_classification_result Source code
print.mvpa_dataset Source code
print.mvpa_design Source code
print.mvpa_model Source code
print.mvpa_surface_dataset Source code
print.mvpa_sysinfo Man page Source code
print.regression_result Source code
print.rsa_design Source code Source code
print.rsa_model Source code
print.searchlight_result Source code
print.twofold_blocked_cross_validation Source code
print.vector_rsa_design Man page Source code
print.vector_rsa_model Man page Source code
prob_corsimFit Source code
prob_observed Man page Source code
prob_observed.binary_classification_result Source code
prob_observed.multiway_classification_result Source code
prob_observed.regression_result Source code
process_roi Source code
process_roi.custom_internal_model_spec Source code
process_roi.default Source code
process_roi_default Source code
process_single_fold Source code
rMVPA Man page
rMVPA-package Man page
regional_mvpa_result Man page Source code
register_mvpa_model Man page Source code
regression_result Man page Source code
removeZeroVarianceColumns Source code
requireNamespaceQuietStop Source code
robustmahadist Man page Source code
roi_surface_matrix Source code
roi_volume_matrix Source code
rsa_design Man page Source code
rsa_model Man page Source code
rsa_model_mat Source code
run_cor Source code
run_custom_regional Man page Source code
run_custom_searchlight Man page Source code
run_future Man page Source code
run_future.default Man page Source code
run_lm Source code
run_lm_constrained Source code
run_lm_semipartial Source code
run_regional Man page Source code
run_regional.default Man page Source code
run_regional.mvpa_model Man page Source code
run_regional.rsa_model Man page Source code
run_regional.vector_rsa_model Man page Source code
run_regional_base Man page Source code
run_rfit Source code
run_searchlight Man page Source code
run_searchlight.contrast_rsa_model Man page Source code
run_searchlight.default Man page
run_searchlight.vector_rsa Man page
run_searchlight_base Man page
sanitize Source code
second_order_similarity Man page Source code
select_features Man page Source code
select_features.FTest Man page Source code
select_features.catscore Man page Source code
select_features.mvpa_model Source code
sequential_blocked_cross_validation Man page Source code
set_arg Source code
set_default Source code
setup_mvpa_logger Source code
spearman_cor Source code
standardize_vars Source code
strip_dataset Man page Source code
strip_dataset.default Man page Source code
strip_dataset.mvpa_model Source code
sub_result Man page Source code
sub_result.binary_classification_result Man page Source code
sub_result.multiway_classification_result Man page Source code
subset_y Source code
summary.feature_rsa_model Man page Source code
test_design Man page Source code
test_design.mvpa_design Source code
train_indices Man page Source code
train_indices.blocked_cross_validation Source code
train_indices.bootstrap_blocked_cross_validation Source code
train_indices.custom_cross_validation Source code
train_indices.kfold_cross_validation Source code
train_indices.sequential_blocked_cross_validation Source code
train_indices.twofold_blocked_cross_validation Source code
train_model Man page Source code
train_model.contrast_rsa_model Man page Source code
train_model.feature_rsa_model Source code
train_model.manova_model Man page Source code
train_model.mvpa_model Man page Source code
train_model.rsa_model Man page Source code
train_model.vector_rsa_model Man page Source code
transform_contrasts Man page Source code
try_warning Source code
tune_grid Man page Source code
tune_grid.mvpa_model Source code
tune_model Source code
twofold_blocked_cross_validation Man page Source code
validate_cutoff Source code
vector_rsa_design Man page Source code
vector_rsa_model Man page Source code
vector_rsa_model_mat Source code
weighted_model Source code
wrap_out Man page Source code
wrap_output Man page Source code
wrap_output.mvpa_dataset Source code
wrap_output.mvpa_surface_dataset Source code
wrap_result Source code
y_test Man page Source code
y_test.mvpa_design Source code
y_test.mvpa_model Source code
y_train Man page Source code
y_train.feature_rsa_design Source code
y_train.feature_rsa_model Source code
y_train.mvpa_design Source code
y_train.mvpa_model Source code
zeroVarianceColumns Source code
zeroVarianceColumns2 Source code
bbuchsbaum/rMVPA documentation built on June 10, 2025, 8:23 p.m.

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