Files in bbuchsbaum/rMVPA
Multivoxel Pattern Analysis in R

..Rcheck/00check.log

.Rbuildignore

.cursor/rules/examples.mdc

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

.travis.yml

CLAUDE.md

DESCRIPTION

NAMESPACE

R/allgeneric.R R/balance.R R/caret_models.R R/classifiers.R R/common.R R/compute_cv_means.R R/contrast_rsa_model.R R/contrasts.R R/crossnobis_helpers.R R/crossval.R R/custom.R R/dataset.R R/design.R R/distcalc.R R/feature_rsa_model.R R/feature_selection.R

R/globals.R

R/manova_model.R R/model_fit.R R/msreve_design.R R/mvpa_iterate.R R/mvpa_model.R R/mvpa_result.R R/new_analysis_overview.R R/performance.R R/rMVPA.R R/regional.R R/register_mvpa_model.R R/resample.R R/resampling_utils.R R/roisplit.R R/rsa_model.R R/searchlight.R R/utils.R R/vector_rsa_model.R

README.html

README.md README.rmd

_pkgdown.yml

caret_removal_plan.md

codecov.yml

contrast_rsa_plan.md contrast_rsa_plan_phase2.md crossnobis.md crossnobis_plan.md

docs/404.html

docs/articles/CommandLineScripts.html

docs/articles/CrossValidation.html

docs/articles/FeatureSelection.html

docs/articles/RSA.html

docs/articles/Regional_Analysis.html

docs/articles/Searchlight_Analysis_files/figure-html/unnamed-chunk-5-1.png

docs/articles/index.html

docs/authors.html

docs/index.html

docs/link.svg

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/as_roi.html

docs/reference/binary_classification_result.html

docs/reference/classification_result.html

docs/reference/compute_performance.html

docs/reference/cross_validation.html

docs/reference/crossv_block.html

docs/reference/crossv_bootstrap_block.html

docs/reference/crossv_k.html

docs/reference/crossv_seq_block.html

docs/reference/crossv_twofold.html

docs/reference/crossval_samples.html

docs/reference/custom_performance.html

docs/reference/data_sample.html

docs/reference/external_crossval.html

docs/reference/feature_selector.html

docs/reference/fit_model.html

docs/reference/gen_sample_dataset.html

docs/reference/get_samples.html

docs/reference/get_searchlight.html

docs/reference/has_test_set.html

docs/reference/index.html

docs/reference/kfold_cross_validation.html

docs/reference/list_model.html

docs/reference/load_model.html

docs/reference/manova_design.html

docs/reference/manova_iterate.html

docs/reference/manova_model.html

docs/reference/merge_predictions.html

docs/reference/merge_results.html

docs/reference/model_fit.html

docs/reference/multiway_classification_result.html

docs/reference/mvpa_dataset.html

docs/reference/mvpa_design.html

docs/reference/mvpa_iterate.html

docs/reference/mvpa_model.html

docs/reference/mvpa_surface_dataset.html

docs/reference/nobs.html

docs/reference/nresponses.html

docs/reference/performance.html

docs/reference/predict.class_model_fit.html

docs/reference/predict.regression_model_fit.html

docs/reference/predicted_class.html

docs/reference/prob_observed.html

docs/reference/rMVPA.html

docs/reference/regression_result.html

docs/reference/rsa_design.html

docs/reference/rsa_iterate.html

docs/reference/rsa_model.html

docs/reference/run_regional.html

docs/reference/run_searchlight.html

docs/reference/select_features.html

docs/reference/sub_result.html

docs/reference/test_design.html

docs/reference/train_model.html

docs/reference/train_model.mvpa_model.html

docs/reference/tune_grid.html

docs/reference/tune_model.html

docs/reference/weighted_model.html

docs/reference/wrap_output.html

docs/reference/y_test.html

docs/reference/y_train.html

extract_caret_models.R

inst/.DS_Store

inst/extdata/.DS_Store

inst/extdata/sub-1005_task-localizer_run-01_bold_space-MNI_preproc_betas_small.nii

man/MVPAModels.Rd man/add_interaction_contrasts.Rd man/as_roi.Rd man/balance_partitions.Rd man/binary_classification_result.Rd man/classification_result.Rd man/coalesce_join2.Rd man/combine_custom_randomized.Rd man/combine_custom_standard.Rd man/combine_msreve_standard.Rd man/combine_prediction_tables.Rd man/combine_randomized.Rd man/combine_rsa_standard.Rd man/combine_standard.Rd man/combine_vector_rsa_standard.Rd man/compute_crossvalidated_means_sl.Rd man/compute_performance.Rd man/contrast_rsa_model.Rd man/contrasts.Rd man/create_dist.Rd man/create_mvpa_folds.Rd man/create_searchlight_performance.Rd man/cross_validation.Rd man/crossv_block.Rd man/crossv_bootstrap_block.Rd man/crossv_k.Rd man/crossval_samples.Rd man/custom_performance.Rd man/data_sample.Rd man/distance-constructors.Rd man/do_merge_results.Rd man/do_randomized.Rd man/do_standard.Rd man/evaluate_model.feature_rsa_model.Rd man/evaluate_model.vector_rsa_model.Rd man/feature_rsa_design.Rd man/feature_rsa_model.Rd man/feature_selection.Rd man/feature_selector.Rd man/filter_roi.Rd man/fit_model.Rd man/format_result.Rd man/gen_sample_dataset.Rd man/get_nfolds.Rd man/get_samples.Rd man/get_searchlight.Rd man/get_unique_regions.Rd man/group_means.Rd man/has_crossval.Rd man/has_test_set.Rd man/kfold_cross_validation.Rd man/load_model.Rd man/make_feature_contrasts.Rd man/manova_design.Rd man/manova_model.Rd man/merge_classif_results.Rd man/merge_predictions.Rd man/merge_results.Rd man/merge_results.manova_model.Rd man/merge_results.regional_mvpa_result.Rd man/merge_results.rsa_model.Rd man/merge_results.vector_rsa_model.Rd man/msreve_design.Rd man/multiway_classification_result.Rd man/mvpa_dataset.Rd man/mvpa_design.Rd man/mvpa_iterate.Rd man/mvpa_model.Rd man/mvpa_surface_dataset.Rd man/mvpa_sysinfo.Rd man/new-analysis-overview.Rd man/nobs.Rd man/nresponses.Rd man/orthogonalize_contrasts.Rd man/performance.Rd man/performance.regression_result.Rd man/pool_randomized.Rd man/predict_model.Rd man/predicted_class.Rd man/prep_regional.Rd man/print.feature_rsa_design.Rd man/print.feature_rsa_model.Rd man/print.mvpa_sysinfo.Rd man/print.vector_rsa_design.Rd man/print.vector_rsa_model.Rd man/prob_observed.Rd man/rMVPA-package.Rd man/rMVPA.Rd man/regional_mvpa_result.Rd man/register_mvpa_model.Rd man/regression_result.Rd man/rsa_design.Rd man/rsa_model.Rd man/run_custom_regional.Rd man/run_custom_searchlight.Rd man/run_future.Rd man/run_regional-methods.Rd man/run_searchlight.Rd man/run_searchlight.contrast_rsa_model.Rd man/run_searchlight.default.Rd man/run_searchlight.vector_rsa.Rd man/run_searchlight_base.Rd man/second_order_similarity.Rd man/select_features-methods.Rd man/strip_dataset.Rd man/strip_dataset.default.Rd man/sub_result.Rd man/sub_result.binary_classification_result.Rd man/sub_result.multiway_classification_result.Rd man/summary.feature_rsa_model.Rd man/test_design.Rd man/train_indices.Rd man/train_model.Rd man/train_model.contrast_rsa_model.Rd man/train_model.manova_model.Rd man/train_model.mvpa_model.Rd man/train_model.rsa_model.Rd man/train_model.vector_rsa_model.Rd man/transform_contrasts.Rd man/tune_grid.Rd man/twofold_blocked_cross_validation.Rd man/vector_rsa_design.Rd man/vector_rsa_model.Rd man/wrap_out.Rd man/wrap_output.Rd man/y_test.Rd man/y_train.Rd oldR/ensemble.R oldR/folds.R oldR/models.R oldR/mvpa_analysis.R oldR/mvpa_model.R oldR/optim.R oldR/similarity.R

rMVPA.Rcheck/00_pkg_src/rMVPA/DESCRIPTION

rMVPA.Rcheck/00_pkg_src/rMVPA/NAMESPACE

rMVPA.Rcheck/00_pkg_src/rMVPA/R/globals.R

rMVPA.Rcheck/00_pkg_src/rMVPA/README.html

rMVPA.Rcheck/00_pkg_src/rMVPA/inst/extdata/sub-1005_task-localizer_run-01_bold_space-MNI_preproc_betas_small.nii

rMVPA.Rcheck/00_pkg_src/rMVPA/raw-data/codebase_digest

rMVPA.Rcheck/00_pkg_src/rMVPA/raw-data/sherlock/all_features_pca.csv

rMVPA.Rcheck/00_pkg_src/rMVPA/raw-data/sherlock/group_bold_mask_small.nii

rMVPA.Rcheck/00_pkg_src/rMVPA/raw-data/sherlock/movie_scan1_crop.tsv

rMVPA.Rcheck/00_pkg_src/rMVPA/raw-data/sherlock/movie_scan2_crop.tsv

rMVPA.Rcheck/00_pkg_src/rMVPA/raw-data/sherlock/run_feature_rsa.R

rMVPA.Rcheck/00_pkg_src/rMVPA/raw-data/sherlock/sherlock_part1_small.nii.gz

rMVPA.Rcheck/00_pkg_src/rMVPA/raw-data/sherlock/sherlock_part2_small.nii.gz

rMVPA.Rcheck/00_pkg_src/rMVPA/repomix-output.txt

rMVPA.Rcheck/00check.log

rMVPA.Rcheck/R_check_bin/R

rMVPA.Rcheck/R_check_bin/Rscript

rMVPA.Rproj

rMVPA_0.1.2.tar.gz

raw-data/codebase_digest

raw-data/sherlock/all_features_pca.csv

raw-data/sherlock/group_bold_mask_small.nii

raw-data/sherlock/movie_scan1_crop.tsv

raw-data/sherlock/movie_scan2_crop.tsv

raw-data/sherlock/run_feature_rsa.R

raw-data/sherlock/sherlock_part1_small.nii.gz

raw-data/sherlock/sherlock_part2_small.nii.gz

repomix-output.txt

roxygen_docs_plan.md roxygen_todo.md scripts/MVPA_Cluster.R scripts/MVPA_Predict.R scripts/MVPA_Regional.R scripts/MVPA_Regional_old.R scripts/MVPA_Searchlight.R scripts/MVPA_Searchlight_old.R scripts/MVPA_Searchlight_old2.R scripts/benchmark_crossnobis_vectorization.R scripts/estimate_betas.R scripts/install_github.R scripts/model_params.R scripts/prep_betas.R signed_rsa_proposal.md surface_test/run.R surface_test/run2.R surface_test/run3.R surface_test/run_roi.R surface_test/run_roi_external.R test1/Example_MVPA_for_SVM_searchlight.R

test1/mvpa_design.txt

test1/test1.R test1/test_regional.R test2/frsa.R

test2/test_feature_rds_roi_data.rds

bbuchsbaum/rMVPA documentation built on June 10, 2025, 8:23 p.m.

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bbuchsbaum/rMVPA
Multivoxel Pattern Analysis in R

Files in bbuchsbaum/rMVPA
Multivoxel Pattern Analysis in R

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bbuchsbaum/rMVPA Multivoxel Pattern Analysis in R

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bbuchsbaum/rMVPA
Multivoxel Pattern Analysis in R

Files in bbuchsbaum/rMVPA
Multivoxel Pattern Analysis in R