Man pages for bcgov/epi.branch.sim
Simulates an Epidemic Outbreak with a Branching Process
| create_record_df | Creates a 'rec_df' object |
| create_state_df | Creates a 'state_df' object |
| draw_contact_rate | Assign physical distancing behaviour to new cases |
| draw_generation_interval | Generate generation intervals for potential secondary... |
| draw_incubation_period | Draw incubation periods for new cases from distribution... |
| draw_infection_length | Determine infection length of new cases |
| draw_isolation_delay_period | Draw delay to isolation periods for new cases |
| draw_sec_infects_df | Stage secondary infections when new cases are generated |
| draw_symptomatic_status | Determine whether a new case is symptomatic from a uniform... |
| draw_trace_app_compliance | Determine whether a case will comply with tracing app... |
| draw_trace_app_user_status | Determine whether a case is using a contact tracing app |
| draw_traced_by_app | Helper function to check primary and secondary trace_app_user... |
| draw_traced_status | Determine whether a case is being manually traced by public... |
| epi.branch.sim-package | epi.branch.sim: Simulates an Epidemic Outbreak with a... |
| generate_imported_infections | Adds imported infections to simulation |
| generate_secondary_infections | Adds secondary infections to simulation |
| initialize_sim_params | Creates 'sim_params' object for global simulation parameters |
| initialize_sim_status | Creates 'sim_status' object, the simulation state vector |
| run_scenario_Hellewell | Run scenarios as in Hellewell et al. (2020) paper |
| step_simulation | Takes the simulation one dt timestep forward |
