Description Usage Arguments Value
View source: R/setup_simulation.R
This object is a list containing global simulation parameters such as the disease parameters, either directly defined or through a distribution with user-provided values. This object also contains some parameters that control the simulation itself. Many of these values are used in other functions, the major ones are linked here.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | initialize_sim_params(
R0,
infect_dur,
vary_trace,
p_trace,
p_trace_app,
p_trace_app_comp,
p_symp,
dt,
incub_params,
generation_int_params,
iso_delay_params,
sec_infect_params,
import_params,
phys_dist_params
)
|
R0 |
Reproductive number of disease. Used in |
infect_dur |
Duration of infection (in days). This constant value determines when
a case is no longer active. It's also the length of the infectious
period, unless the case is isolated. See |
vary_trace |
Boolean to determine whether contact tracing is a constant or variable
based on the number of new cases in a cluster.
See |
p_trace |
Probability that a case will be manually traced. |
p_trace_app |
Probability that a case will be a contact tracing app user. |
p_trace_app_comp |
Probability that a case would comply with contact tracing app recommendations. |
p_symp |
Probability that a case is symptomatic.
Used in |
dt |
Size of the simulation time step (in days). |
incub_params |
Parameters for distribution of incubation length.
See |
generation_int_params |
Parameters for distribution of generation intervals.
See |
iso_delay_params |
Parameters for distribution of delay to isolation.
See |
sec_infect_params |
Parameters to model secondary infections.
See |
import_params |
Parameters to model imported infections.
See |
phys_dist_params |
Parameters to model physical (social) distancing or
other interventions that reduce the potential to
cause secondary infections.
See |
A list containing all of the above entries
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