Files in bcm-uga/MatrixFactorizationR

Latent Factor Mixed Models

.gitignore

DESCRIPTION

LICENSE

Makefile

NAMESPACE

R/Dat.R R/LfmmDat.R R/RcppExports.R R/cross-validation.R R/example_data.R R/helpers.R R/hypothesis-testing.R R/io.R R/lassoLFMM.R R/lfmm.R R/matrix-factorizationR.R R/ridgeLFMM.R R/sampler.R R/skin_exposure.R README.md

_pkgdown.yml

data/example.data.rda

data/skin.exposure.rda

docs/LICENSE.html

docs/articles/index.html

docs/articles/lfmm.html

docs/articles/lfmm_files/figure-html/unnamed-chunk-10-1.png

docs/articles/lfmm_files/figure-html/unnamed-chunk-13-1.png

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docs/articles/lfmm_files/figure-html/unnamed-chunk-9-1.png

docs/authors.html

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/reference/Dat.html

docs/reference/LfmmDat.html

docs/reference/SimulatedLfmmDat.html

docs/reference/compute_P.html

docs/reference/compute_pvalue_from_tscore.html

docs/reference/compute_pvalue_from_zscore.html

docs/reference/effect_size-1.png

docs/reference/effect_size-2.png

docs/reference/effect_size-3.png

docs/reference/effect_size.html

docs/reference/example.data.html

docs/reference/forward_test-1.png

docs/reference/forward_test-2.png

docs/reference/forward_test.html

docs/reference/hypothesis_testing_lm.html

docs/reference/index.html

docs/reference/left.out.kfold.html

docs/reference/lfmm.html

docs/reference/lfmm_CV.html

docs/reference/lfmm_fit.html

docs/reference/lfmm_fit_knowing_loadings.html

docs/reference/lfmm_fit_knowing_loadings.ridgeLFMM.html

docs/reference/lfmm_impute.html

docs/reference/lfmm_lasso-1.png

docs/reference/lfmm_lasso-2.png

docs/reference/lfmm_lasso.html

docs/reference/lfmm_residual_error2.html

docs/reference/lfmm_ridge-1.png

docs/reference/lfmm_ridge-2.png

docs/reference/lfmm_ridge.html

docs/reference/lfmm_ridge_CV-1.png

docs/reference/lfmm_ridge_CV-2.png

docs/reference/lfmm_ridge_CV.html

docs/reference/lfmm_sampler.html

docs/reference/lfmm_test-1.png

docs/reference/lfmm_test-2.png

docs/reference/lfmm_test.html

docs/reference/predict_lfmm-1.png

docs/reference/predict_lfmm-2.png

docs/reference/predict_lfmm.html

docs/reference/skin.exposure.html

hooks/post-receive.sh

inst/doc/lfmm.R inst/doc/lfmm.Rmd

inst/doc/lfmm.html

man/Dat.Rd man/LfmmDat.Rd man/SimulatedLfmmDat.Rd man/compute_P.Rd man/compute_pvalue_from_tscore.Rd man/compute_pvalue_from_zscore.Rd man/effect_size.Rd man/example.data.Rd man/forward_test.Rd man/glm_test.Rd man/hypothesis_testing_lm.Rd man/left.out.kfold.Rd man/lfmm.Rd man/lfmm_CV.Rd man/lfmm_fit.Rd man/lfmm_fit_knowing_loadings.Rd man/lfmm_fit_knowing_loadings.ridgeLFMM.Rd man/lfmm_impute.Rd man/lfmm_lasso.Rd man/lfmm_residual_error2.Rd man/lfmm_ridge.Rd man/lfmm_ridge_CV.Rd man/lfmm_sampler.Rd man/lfmm_test.Rd man/predict_lfmm.Rd man/skin.exposure.Rd

src/RcppExports.cpp

src/helpers.cpp

src/tess3.cpp

tests/testthat.R tests/testthat/test-dat.R tests/testthat/test-helpers.R tests/testthat/test-hypothesis-testing.R tests/testthat/test-lassoLFMM.R tests/testthat/test-lfmm.R tests/testthat/test-ridgeLFMM.R tests/testthat/test-sampler.R

tests/testthat/test-tess3.R

vignettes/lfmm.Rmd

bcm-uga/MatrixFactorizationR documentation built on June 17, 2020, 6:55 p.m.