Files in bcm-uga/TESS3_encho_sen
Inference of Spatial Population Genetic Structure

.Rbuildignore
.dockerignore
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
LICENSE
Makefile
NAMESPACE
R/RcppExports.R R/check.R R/error.R R/getter.R R/graph.R R/helpers.R R/imputation.R R/plotG.R R/plotQ.R R/sampler.R R/selectionscan.R R/solver.R R/spatialPlots.R R/tess3.R R/tess3project.R R/utils.R R/variogram.R README.md
Rakefile
Rmarkdown/Todo.Rmd Rmarkdown/comp_TESS3EnchoSen_TESS3.Rmd Rmarkdown/raster_with_R.Rmd
TESS3enchoSen.Rproj
TODO/README.md
_pkgdown.yml
data-raw/data_test.R
data-test/bugOF23022017/coord.txt
data-test/bugOF23022017/q3.txt
data/data.at.rda
data/data.for.test.rda
data/durand09.rda
docker.mk
docs/LICENSE.html
docs/articles/index.html
docs/articles/main-vignette.html
docs/articles/main-vignette_files/figure-html/G.plot1b-1.png
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docs/jquery.sticky-kit.min.js
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docs/reference/CalculateEmpiricalGenSemivariogram.html
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docs/reference/CheckCoord.html
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docs/reference/CheckWCoord.html
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docs/reference/CheckXBin.html
docs/reference/CheckXBinCoord.html
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docs/reference/CheckXCoord.html
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docs/reference/ComputeAveragedCrossEntropy.html
docs/reference/ComputeChi2AndPvalue.html
docs/reference/ComputeEigenValuesWithIgraphArpack.html
docs/reference/ComputeEigenValuesWithRSpectra.html
docs/reference/ComputeExponetialWeight.html
docs/reference/ComputeFst.html
docs/reference/ComputeGraphLaplacian.html
docs/reference/ComputeHeatKernelWeight.html
docs/reference/ComputeHeatKernelWeightSparse.html
docs/reference/ComputeMeanDist.html
docs/reference/ComputeRmse.html
docs/reference/ComputeRmseWithBestPermutation.html
docs/reference/ComputeRmseWithBestPermutationGreedy.html
docs/reference/ComputeSpatialPenalty.html
docs/reference/ComputeTscoreAndPvalue.html
docs/reference/ComputeWindow.html
docs/reference/CreatePalette.html
docs/reference/DebugMessage.html
docs/reference/FieldsKrigModel.html
docs/reference/FieldsTpsModel.html
docs/reference/Gettess3res.html
docs/reference/GtoFreq.html
docs/reference/ImputeRandom.html
docs/reference/PlotInterpotationAll.html
docs/reference/PlotInterpotationMax.html
docs/reference/PlotPiechartAncestryCoef.html
docs/reference/SampleDistFromCenterDirichletQ.html
docs/reference/SampleDistFromCenterQ.html
docs/reference/SampleFuncQ.html
docs/reference/SampleGenoFromGenerativeModelTESS3.html
docs/reference/SampleGenoOFWithMs.html
docs/reference/SampleNormalClusterCoord.html
docs/reference/SampleTESS2.3Q.html
docs/reference/SampleUnifDirichletG.html
docs/reference/SampleUnifQ.html
docs/reference/TestRequiredPkg.html
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docs/reference/as.qmatrix-1.png
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docs/reference/barplot.tess3Q-1.png
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docs/reference/ggtess3Q.html
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docs/reference/is.tess3.html
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hooks/pre-push.sh
man/CalculateEmpiricalGenSemivariogram.Rd man/CalculateEmpiricalSemivariogram.Rd man/CheckCoord.Rd man/CheckW.Rd man/CheckWCoord.Rd man/CheckX.Rd man/CheckXBin.Rd man/CheckXBinCoord.Rd man/CheckXBinW.Rd man/CheckXCoord.Rd man/CheckXW.Rd man/ComputeAveragedCrossEntropy.Rd man/ComputeChi2AndPvalue.Rd man/ComputeEigenValuesWithIgraphArpack.Rd man/ComputeEigenValuesWithRSpectra.Rd man/ComputeExponetialWeight.Rd man/ComputeFst.Rd man/ComputeGraphLaplacian.Rd man/ComputeHeatKernelWeight.Rd man/ComputeHeatKernelWeightSparse.Rd man/ComputeMeanDist.Rd man/ComputeRmse.Rd man/ComputeRmseWithBestPermutation.Rd man/ComputeRmseWithBestPermutationGreedy.Rd man/ComputeSpatialPenalty.Rd man/ComputeTscoreAndPvalue.Rd man/ComputeWindow.Rd man/CreatePalette.Rd man/DebugMessage.Rd man/FieldsKrigModel.Rd man/FieldsTpsModel.Rd man/Gettess3res.Rd man/GtoFreq.Rd man/ImputeRandom.Rd man/PlotInterpotationAll.Rd man/PlotInterpotationMax.Rd man/PlotPiechartAncestryCoef.Rd man/SampleDistFromCenterDirichletQ.Rd man/SampleDistFromCenterQ.Rd man/SampleFuncQ.Rd man/SampleGenoFromGenerativeModelTESS3.Rd man/SampleGenoOFWithMs.Rd man/SampleNormalClusterCoord.Rd man/SampleTESS2.3Q.Rd man/SampleUnifDirichletG.Rd man/SampleUnifQ.Rd man/TestRequiredPkg.Rd man/X2XBin.Rd man/XBin2X.Rd man/as.qmatrix.Rd man/barplot.tess3Q.Rd man/data.at.Rd man/data.for.test.Rd man/durand09.Rd man/ggtess3Q.Rd man/is.tess3.Rd man/is.tess3Main.Rd man/plot.tess3.Rd man/plot.tess3Main.Rd man/plot.tess3Q.Rd man/plot.tess3pvalue.Rd man/pvalue.Rd man/qmatrix.Rd man/rmse.tess3Main.Rd man/run.ms.Rd man/summary.tess3.Rd man/summary.tess3Main.Rd man/tess2tess3.Rd man/tess3.Rd man/tess3Main.Rd man/tess3r.Rd
src/#samplerHelpers.cpp#
src/Makevars
src/RcppExports.cpp
src/error.cpp
src/genotypeDataFuntions.cpp
src/graph.cpp
src/samplerHelpers.cpp
src/selectionScan.cpp
src/solver.cpp
templates/content-home.html
templates/content-news-index.html
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templates/content-reference-topic.html
templates/content-vignette-index.html
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tests/testthat.R tests/testthat/test_bugOF23022017.R tests/testthat/test_check.R tests/testthat/test_error.R tests/testthat/test_genotypedatafunctions.R tests/testthat/test_graph.R tests/testthat/test_impute.R tests/testthat/test_likelihood.R tests/testthat/test_parallel.R tests/testthat/test_plots.R tests/testthat/test_sampler.R tests/testthat/test_solvers.R tests/testthat/test_tess3main.R tests/testthat/test_tess3project.R tests/testthat/test_truedataset.R tests/testthat/test_usage.R tests/testthat/test_variogram.R vignettes/main-vignette.Rmd
bcm-uga/TESS3_encho_sen documentation built on July 4, 2017, 3:30 p.m.