compute_D: Computation of the D matrix.

In bcm-uga/medepir: MEthylation DEconvoluation PIpeline in R

Description

This function compute the D matrix with an effect on age and / or plates

Usage

compute_D(A_mat, T_mat, exp_grp, sites_sex = NA, coeff_sex = NA,
  plate_effect = NA)

Arguments

A_mat	The A matrix.
T_mat	The T matrix.
exp_grp	The matrix of experimental data for all the patients.
sites_sex	NA by default, set sites affected by sex if you want a sex effect
coeff_sex	NA by default, set coeff of sex if you want a sex effect.
plate_effect,	Na by default, put plate_effect if you want one

Value

This function return a matrix of size probes*n with possibly an effect of confounding factors

bcm-uga/medepir documentation built on Oct. 11, 2020, 2 a.m.