Description Usage Arguments Value References Examples
This calculates I2, a weighted average of the balance of internal nodes, where N is the number of tips, j is the number of nodes, and r_j and l_j represent the number of tips in the left and right subtrees respectively. Then,
I_2 = \frac{1}{(N-2)} ∑_{j \in \mathcal{I},r_j+l_j>2 } {|r_j-l_j|}/{|r_j+l_j-2|}.
1 | I2(tree)
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tree |
A tree of class |
An object of class numeric
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Pompei S, Loreto V, Tria F (2012) Phylogenetic Properties of RNA Viruses. PLoS ONE 7(9): e44849. doi:10.1371/journal.pone.0044849
Purvis A, Agapow PM (2002) Phylogeny imbalance: Taxonomic level matters. Systematic Biology 51: 844-854.
Fusco G, Cronk Q (1995) A new method for evaluating the shape of large phylogenies. Journal of Theoretical Biology 175: 235-243. doi: 10.1006/jtbi.1995.0136
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