API for beadyallen/MGnifyR
R interface to EBI MGnify metagenomics resource

Global functions
.convert_json_list_to_df	Source code
.convert_results_to_object	Source code
.create_TreeSE_from_func_data	Source code
.get_all_analyses_ids	Source code
.get_bulk_files	Source code
.get_results_as_json_list	Source code
.get_url_address	Source code
.is_a_bool	Source code
.is_an_integer	Source code
.is_non_empty_character	Source code
.is_non_empty_string	Source code
.list_to_dataframe	Source code
.mgnify_analyses_from_studies_and_samples	Source code
.mgnify_download	Source code
.mgnify_get_analyses_metadata	Source code
.mgnify_get_analyses_results	Source code
.mgnify_get_analyses_treese	Source code
.mgnify_get_download_urls	Source code
.mgnify_get_single_analysis_metadata	Source code
.mgnify_get_single_analysis_results	Source code
.mgnify_get_single_analysis_treese	Source code
.mgnify_get_x_for_y	Source code
.mgnify_parse_func	Source code
.mgnify_parse_tax	Source code
.mgnify_retrieve_json	Source code
.perform_query	Source code
.require_package	Source code
.retrieve_json_data	Source code
MGnifyR	Man page
MGnifyR-package	Man page
MgnifyClient	Man page Source code
MgnifyClient-accessors	Man page
MgnifyClient-class	Man page
authTok	Man page
authTok,MgnifyClient-method	Man page
authTok<-	Man page
authTok<-,MgnifyClient-method	Man page
cacheDir	Man page
cacheDir,MgnifyClient-method	Man page
cacheDir<-	Man page
cacheDir<-,MgnifyClient-method	Man page
clearCache	Man page
clearCache,MgnifyClient-method	Man page
clearCache<-	Man page
clearCache<-,MgnifyClient-method	Man page
databaseUrl	Man page
databaseUrl,MgnifyClient-method	Man page
databaseUrl<-	Man page
databaseUrl<-,MgnifyClient-method	Man page
deprecate	Man page
doQuery	Man page
doQuery,MgnifyClient-method	Man page
getData	Man page
getData,MgnifyClient-method	Man page
getFile	Man page
getFile,MgnifyClient-method	Man page
getMetadata	Man page
getMetadata,MgnifyClient-method	Man page
getResult	Man page
getResult,MgnifyClient-method	Man page
mgnify_analyses_from_samples	Man page Source code
mgnify_analyses_from_studies	Man page Source code
mgnify_client	Man page Source code
mgnify_download	Man page Source code
mgnify_get_analyses_metadata	Man page Source code
mgnify_get_analyses_phyloseq	Man page Source code
mgnify_get_analyses_results	Man page Source code
mgnify_get_download_urls	Man page Source code
mgnify_query	Man page Source code
mgnify_retrieve_json	Man page Source code
searchAnalysis	Man page
searchAnalysis,MgnifyClient-method	Man page
searchFile	Man page
searchFile,MgnifyClient-method	Man page
showWarnings	Man page
showWarnings,MgnifyClient-method	Man page
showWarnings<-	Man page
showWarnings<-,MgnifyClient-method	Man page
useCache	Man page
useCache,MgnifyClient-method	Man page
useCache<-	Man page
useCache<-,MgnifyClient-method	Man page
verbose	Man page
verbose,MgnifyClient-method	Man page
verbose<-	Man page
verbose<-,MgnifyClient-method	Man page