removeFromGeMS: Rmove one or gene sets of the same source and user from GeMS

In bedapub/ribiosGSEA: Gene-Set Enrichment Analysis Tools in Ribios

Rmove one or gene sets of the same source and user from GeMS

Description

Rmove one or gene sets of the same source and user from GeMS

Usage

removeFromGeMS(
  setName = "",
  source = "",
  user = ribiosUtils::whoami(),
  subtype = ""
)

Arguments

setName	A vector of character strings, defining set names to be renamed. They must all have the same source, user, and subtype
source	Character string, source of the gene set(s)
user	Character string, user name
subtype	Character string, subtype of the gene set(s)

Value

Response code or error message returned by the GeMS API. A value of 200 indicates a successful insertion.

See Also

insertGmtListToGeMS

Examples

## Not run: 
  testList <- list(list(name="GS_A", desc=NULL, genes=c("MAPK14", "JAK1", "EGFR")),
    list(name="GS_B", desc="gene set B", genes=c("ABCA1", "DDR1", "DDR2")),
    list(name="GS_C", desc="gene set C", genes=NULL))
  testGmt <- BioQC::GmtList(testList)
  ## insertGmtListToGeMS(testGmt, geneFormat=0, source="Test")
  ## removeFromGeMS(setName=c("GS_A", "GS_B", "GS_C"), source="Test")

## End(Not run)

bedapub/ribiosGSEA documentation built on March 30, 2023, 3:26 p.m.