zscoreDGE: Calculate mid-p quantile residuals

In bedapub/ribiosGSEA: Gene-Set Enrichment Analysis Tools in Ribios

Calculate mid-p quantile residuals

Description

Calculate mid-p quantile residuals

Usage

zscoreDGE(y, design = NULL, contrast = ncol(design))

Arguments

y	An DGEList object
design	Design matrix
contrast	Contrast vector The function is a carbon copy of edgeR:::.zscoreDGE, which is unfortunately not exported

Examples

dgeMatrix <- matrix(rpois(1200, 10), nrow=200)
dgeList <- DGEList(dgeMatrix)
dgeList <- edgeR::estimateCommonDisp(dgeList)
dgeDesign <- model.matrix(~gl(2,3))
dgeZscore <- zscoreDGE(dgeList, dgeDesign, contrast=c(0,1))
head(dgeZscore)

bedapub/ribiosGSEA documentation built on March 30, 2023, 3:26 p.m.