generateNAMpedigree: Generates NAM pedigree
In behuang/spclust: Selective phenotyping for experimental crosses
Description
Usage
Arguments
Value
Note
Description
Generated a pedigree for a Nested Association Mapping
population
Usage
1
2
generateNAMpedigree(nparents = 26, nperfam = 200,
nssdgen = 6)
Arguments
nparents
Total number of parents
nperfam
Number of lines per family
nssdgen
Number of generations of selfing
Value
A four column matrix with IDs for each individual,
maternal parent ID, paternal parent ID, and a flag for
whether the individual was observed.
Note
The first founder will be the common parent, assumed for
all F1s to be the maternal parent. Default parameters are
those for the original maize NAM population (ref).
behuang/spclust documentation built on May 12, 2019, 10:54 a.m.
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Description Usage Arguments Value Note
Description
Generated a pedigree for a Nested Association Mapping population
Usage
1 2 | generateNAMpedigree(nparents = 26, nperfam = 200,
nssdgen = 6)
|
Arguments
nparents |
Total number of parents |
nperfam |
Number of lines per family |
nssdgen |
Number of generations of selfing |
Value
A four column matrix with IDs for each individual, maternal parent ID, paternal parent ID, and a flag for whether the individual was observed.
Note
The first founder will be the common parent, assumed for all F1s to be the maternal parent. Default parameters are those for the original maize NAM population (ref).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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