test_randomForest: A list used to verify that ps_randomForest() is valid

In benmarwick/karon: Compositional Data Analysis of Archaeological Artefacts

A list used to verify that ps_randomForest() is valid

Description

A list used to verify that ps_randomForest() is valid

Usage

test_randomForest

Format

A list with the following elements

usage:

A string with the contents of the argument doc, the date run, the version of R used

dataUsed:

The contents of the argument data restricted to the groups used

sourcesNA:

A data frame with data from the data frame data with missing values, NÁ if no missing values

analyticVars:

A vector with the value of the argument AnalyticVars

params:

A list with the values of the grouping, logical, and numeric arguments

formulaRf:

The formula used in the analysis (the variables specified in the argument AnalyticVars separated by + signs)

forest:

A summary of the random forest call, estimated error rate, and confusion matrix

importance:

A data frame with information on the importance of each variable in AnalyticVars

confusion:

A data frame with the estimate of the confusion matrix

predictedData:

A data frame with the artifact data used for predictions; if there is missing data, after imputation of the missing data

predictedNA:

A data frame with the observations for which missing data were imputed; NA if there are no missing data

predictedSources:

A data frame with prediction information, sample ID (if requested), and values of AnalyticVars

predictedTotals:

A vector with the predicted totals for each group (source)

impError:

The estimated OOB (out of bag) error for imputed predictor data; NA if no imputed data

location:

The value of the parameter folder

benmarwick/karon documentation built on July 29, 2023, 10:11 a.m.