get_llh_freq: Get the log-likelihood of data assuming sample frequencies...

In benmarwick/signatselect: signatselect: Identifying signatures of selection

Description

get_llh_freq computes the Gaussian approximation assuming that the actual frequencies are the sampled frequencies

Usage

get_llh_freq(prior, lgth, prec, tvec, nuvec, s, alpha, f0)

Arguments

prior	a function that returns the prior distribution (default: function(x)1)
lgth	number of data points in the time series
prec	minimum precision for optimisation
tvec	time points for the time series (start with 0)
nuvec	percent of successful samples per time point
s	selection coefficient
alpha	population size, bounded [0,Inf)
f0	initial frequency for the underlying logistic change

Value

A log-likelihood estimate.

benmarwick/signatselect documentation built on Dec. 4, 2019, 4:22 p.m.