API for benstory/mitoClone2
Clonal Population Identification in Single-Cell RNA-Seq Data using Mitochondrial and Somatic Mutations
| Global functions | |
|---|---|
| M_P1 | Man page |
| M_P2 | Man page |
| N_P1 | Man page |
| N_P2 | Man page |
| addnodesSCITE | Source code |
| attach2tree | Source code |
| attachTreeAt | Source code |
| bam2R_10x | Man page Source code |
| baseCountsFromBamList | Man page Source code |
| clones2tree | Source code |
| clusterMetaclones | Man page Source code |
| cutTreeAt | Source code |
| data | Man page |
| exclusionlists | Man page |
| getAlleleCount | Man page Source code |
| getBranches | Source code |
| getCloneLikelihood | Man page Source code |
| getConfidence | Man page Source code |
| getMainClone | Man page Source code |
| getMut2Clone | Man page Source code |
| getNodes | Source code |
| getVarsCandidate | Man page Source code |
| mitoPlot | Man page Source code |
| mut2GR | Man page Source code |
| mutationCalls | Man page |
| mutationCalls-class | Man page |
| mutationCallsFromCohort | Man page Source code |
| mutationCallsFromExclusionlist | Man page Source code |
| mutationCallsFromMatrix | Man page Source code |
| overwriteMetaclones | Man page Source code |
| permutate | Source code |
| plotClones | Man page Source code |
| pullcountsVars | Man page Source code |
| quick_cluster | Man page Source code |
| removeDepth | Source code |
| removeWindow | Man page Source code |
| setVarsCandidate | Man page Source code |
| toGraphviz | Source code |
| topy | Source code |
| tree2clones | Source code |
| varCluster | Man page Source code |
