to_parameters: Format ipath data.frame as parameters
In betsig/ipath: Plot metabolic pathways with iPath3

Description Usage Arguments Value Author(s)

Format ipath data.frame as parameters

to_parameters(ipath_data, default_color = "#bdbdbd", default_width = 3,
  default_radius = 7, default_opacity = 1, keep_colors = FALSE,
  whole_modules = FALSE, whole_pathways = FALSE,
  query_reactions = FALSE, tax_filter = "", export_dpi = 1200)

`ipath_data`	data.frame formatted for sending to ipath
`default_color`	Hex color value. Non-selected parts of the map will use this color by default.
`default_width`	Default path/edge width (px) for the non-selected parts of the map.
`default_radius`	Compound radius (px) for the non-selected parts of the map.
`default_opacity`	Opacity setting for the non-selected parts of the map. Zero represents full transparency, while one is fully opaque.
`keep_colors`	Keep original colors? When TRUE, non-selected parts of the map will not change color to the default one.
`whole_modules`	Select whole modules? When TRUE, any KEGG module with at least one matching edge or compound will be highlighted.
`whole_pathways`	Select whole pathways? If TRUE, any pathway with at least one matching edge or compound will be highlighted.
`query_reactions`	Query reaction compounds. If TRUE, compound presence within each edges reactions will also be checked
`tax_filter`	string containing either NCBI tax ID or KEGG 3 letter species code(s). Only pathways present in selected species will be included in the map.
`export_dpi`	numeric value for DPI of SVG output.