README.md

In bhaibeka/MetaGx0: R package for meta-analysis of breast cancer gene expressions

MetaGx

Scripts to download and curate breast cancer datasets from InSilicoDB

Dependencies:

Install the R/Bioconductior dependencies:

pp <- c("InSilicoDb", "Biobase", "BiocGenerics", "org.Hs.eg.db", "survival", "survcomp", "genefu", "mRMRe", "WriteXLS")

source("http://bioconductor.org/biocLite.R")

myrepos <- biocinstallRepos()

rr <- biocLite(pkgs=pp, dependencies=TRUE, type="source", destdir=".")

TODO - Weighted survival does not work properly (number of patients per time points should be "unweighted") - METABRIC and STAT1?

bhaibeka/MetaGx0 documentation built on May 12, 2019, 8:22 p.m.