GTML_Mouse_Preds: Table of Pre-computed MM2S Predictions for 32 replicates of...

In bhklab/MM2S: Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines

Description

Table containing percent confidence scores for 32 mouse model replicates, across 5 Medulloblastoma subtypes (WNT, SHH, Group3, Group4, and Normal)

Usage

data(GTML_Mouse_Preds)

Format

A data frame with 32 observations on the following 5 variables.

Group3

a numeric vector

Group4

a numeric vector

SHH

a numeric vector

WNT

a numeric vector

NORMAL

a numeric vector

Details

Gene Expression data of the GTML model was obtained from GSE36594 and normalized as described in (references). The table is an example of MM2S output for that set of samples.

References

Gendoo, D. M., Smirnov, P., Lupien, M. & Haibe-Kains, B. Personalized diagnosis of medulloblastoma subtypes across patients and model systems. Genomics, doi:10.1016/j.ygeno.2015.05.002 (2015)

Manuscript URL: http://www.sciencedirect.com/science/article/pii/S0888754315000774

See Also

PredictionsHeatmap

Examples

data(GTML_Mouse_Preds)
PredictionsHeatmap(InputMatrix=GTML_Mouse_Preds, pdf_output=TRUE,pdfheight=20,pdfwidth=5)

bhklab/MM2S documentation built on Dec. 25, 2021, 10:48 a.m.