assignSubtypes: Assign Sample Subtypes to an S4 Object

In bhklab/PDATK: Pancreatic Ductal Adenocarcinoma Tool-Kit

Description

Assign Sample Subtypes to an S4 Object

Usage

assignSubtypes(object, subtypes, ...)

Arguments

object	An S4 object containing a slot representing samples or patients.
subtypes	A mapping to assign subtypes to the samples or patients in the object.
...	Allow new parameters to be defined for this generic.

Value

object with subtypes assigned to the sample metadata and the isSubtyped metadata item set to TRUE.

Examples

data(sampleICGCmicro)
data(cohortSubtypeDFs)

cohortList <- assignSubtypes(sampleICGCmicro,
  subtypes=cohortSubtypeDFs$ICGCMICRO,
  sampleCol='sample_name',
  subtypeCol='subtype')

bhklab/PDATK documentation built on Dec. 27, 2021, 7:46 a.m.