plotNetworkGraph-NCSModel-method: Plot a Network Graph for a Classified NCSModel Object

In bhklab/PanCuRx: Pancreatic Ductal Adenocarcinoma Tool-Kit

Description

Visualize metaclusters predicted using network community search on the consensus clustering results for a MultiAssayExperiment of patient cohorts.

Usage

## S4 method for signature 'NCSModel'
plotNetworkGraph(object, ..., palette = "Set1", clusterLabels)

Arguments

object	A classified NCSModel object, as returned by the predictClasses method.
...	Not used, force subsequent arguments to be named.
palette	character A valid pallete for use in RColourBrewer::brewer.pal
clusterLabels	A character vector of names for the metaclusters. Defaults to the cluster number.

Value

A ggplot object containing the network graph, showing the relative edge distances between each cluster in each cohort along with the predicted metacluster label.

bhklab/PanCuRx documentation built on Dec. 30, 2021, 4:59 p.m.