bhklab/consensusOV: Gene expression-based subtype classification for high-grade serous ovarian cancer

This package implements four major subtype classifiers for high-grade serous (HGS) ovarian cancer as described by Helland et al. (PLoS One, 2011), Bentink et al. (PLoS One, 2012), Verhaak et al. (J Clin Invest, 2013), and Konecny et al. (J Natl Cancer Inst, 2014). In addition, the package implements a consensus classifier, which consolidates and improves on the robustness of the proposed subtype classifiers, thereby providing reliable stratification of patients with HGS ovarian tumors of clearly defined subtype.

Getting started

Package details

AuthorGregory M Chen, Lavanya Kannan, Ludwig Geistlinger, Victor Kofia, Levi Waldron, Benjamin Haibe-Kains
Bioconductor views Classification Clustering DifferentialExpression GeneExpression Microarray Transcriptomics
MaintainerBenjamin Haibe-Kains <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
bhklab/consensusOV documentation built on Nov. 2, 2018, 1:52 p.m.