In bihealth/metaquac: Metabolomics Targeted Quality Control

knitr::opts_chunk$set(
  echo = FALSE,
  warning = FALSE,
  error = params$ignore_errors,
  fig.width = 7,
  fig.height = 5,
  fig.align = "center"
  # out.width = "100%"
  # dev=c('png', 'pdf')
)
knitr::opts_knit$set(
  eval.after = 'fig.cap'
)

This report was created with MeTaQuaC vr packageVersion("metaquac").

The data as imported, restructured and preprocessed in this report is available for export in the section Preprocessing (via the full data tables provided for each preprocessing step).

cat("
Before reading and interpreting this QC report, please make sure to be familiar
with the Biocrates kit used, i.e. familiarize your self with the compounds,
sample types, status values, terminology, analytical specification, etc.
Please refer to Biocrates' manuals and documents provided with the kit used.\n
")

Data Preparation

Table

easy_datatable(
  data = biocrates,
  caption = paste0("Full data before preprocessing")
)

Overview

Preprocessing {.tabset #preprocessing}

Quality Control

Multivariate Visualization

Miscellaneous

bihealth/metaquac documentation built on Aug. 7, 2021, 8:40 a.m.