Files in billdenney/Rsdtm
Study Data Tabulation Model (SDTM) import, export, and management assistance

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/c_to_n.R R/data.R R/date_conversion.R R/detect_domain.R R/first_dose.R R/import_sdtm.R R/iso8601_regexp.R R/make_param_label.R R/merge_supp.R R/scale_x_VISITDY.R R/sdtm_example_dataverse.R R/sdtm_example_theoph.R R/simplify_sdtm_names.R R/standardize_ids.R R/time_actual.R README.md

_pkgdown.yml

codecov.yml

data-raw/ADaMIG_1.0/Domain_Specifications/ADSL-specification.csv

data-raw/ADaMIG_1.0/Domain_Specifications/Analysis_Descriptor_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.0/Domain_Specifications/Analysis_Parameter_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.0/Domain_Specifications/Data_Point_Traceability_Variables.csv

data-raw/ADaMIG_1.0/Domain_Specifications/Indicator_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.0/Domain_Specifications/Subject_Identifier_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.0/Domain_Specifications/Timing_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.0/Domain_Specifications/Treatment_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/ADSL_Dose_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/ADSL_Identifier_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/ADSL_Population_Indicator_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/ADSL_Subject_Demographics_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/ADSL_Subject_Level_Trial_Experience_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/ADSL_Treatment_Timing_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/ADSL_Treatment_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Analysis_Descriptor_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Analysis_Parameter_Criteria_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Analysis_Parameter_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Analysis_Visit_Windowing_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/BDS_Population_Indicators.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Datapoint_Traceability_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Identifier_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Indicator_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Period_Subperiod_Phase_Start_End_Timing_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Record_Level_Dose_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Record_Level_Treatment_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Subject_level_Period_Subperiod_Phase_Timing_Variables.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Suffixes_User_Defined_Timing_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Time_To_Event_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Timing_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.1/Domain_Specifications/Toxicity_Range_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/ADSL_Dose_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/ADSL_Identifier_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/ADSL_Population_Indicator_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/ADSL_Stratification_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/ADSL_Subject_Demographics_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/ADSL_Subject_Level_Trial_Experience_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/ADSL_Treatment_Timing_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/ADSL_Treatment_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Analysis_Descriptor_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Analysis_Parameter_Criteria_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Analysis_Parameter_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Analysis_Visit_Windowing_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/BDS_Population_Indicators.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Datapoint_Traceability_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Flag_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Identifier_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Period_Subperiod_Phase_Start_End_Timing_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Record_Level_Dose_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Record_Level_Treatment_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Subject_Level_Period_Subperiod_Phase_Timing_Variables.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Suffixes_Producer_Defined_Timing_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Time_To_Event_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Timing_Variables_BDS_Datasets.csv

data-raw/ADaMIG_1.2/Domain_Specifications/Toxicity_Range_Variables_BDS_Datasets.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Adverse_Event_Descriptive_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Adverse_Events_Concomitant_Medications_Indicator_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Adverse_Events_Indicator_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Concomitant_Medications_Descriptive_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Concomitant_Medications_Indicator_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/MedDRA_Dictionary_Coding_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/MedDRA_Occurrence_Flag_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/OCCDS_Identifier_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/OCCDS_Indicator_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/OCCDS_Occurrence_Flag_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Original_or_Prior_MedDRA_Coding_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Original_or_Prior_WHO_Drug_Coding_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Other_Categorization_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/SDTM_Indicator_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Standardized_MedDRA_Query_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Timing_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/Treatment_Dose_Variables.csv

data-raw/ADaMOCCDS_1.0/Domain_Specifications/WHO_Drug_Dictionary_Coding_Variables.csv

data-raw/SDTMIG_3.2/Domain_Specifications/AE-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/CE-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/CM-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/CO-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/DA-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/DD-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/DM-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/DS-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/DV-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/EC-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/EG-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/EX-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/FA-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/HO-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/IE-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/IS-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/LB-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/MB-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/MH-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/MI-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/MO-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/MS-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/PC-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/PE-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/PP-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/PR-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/QS-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/RELREC-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/RP-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/RS-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/SC-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/SE-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/SR-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/SS-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/SU-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/SV-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/Supplemental_Qualifiers-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/TA-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/TD-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/TE-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/TI-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/TR-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/TS-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/TU-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/TV-specification.csv

data-raw/SDTMIG_3.2/Domain_Specifications/VS-specification.csv

data-raw/SDTMIG_3.3/Domain_Specifications/CO-specification.csv

data-raw/SDTMIG_3.3/Domain_Specifications/DM-specification.csv

data-raw/SDTMIG_3.3/Domain_Specifications/SE-specification.csv

data-raw/SDTMIG_3.3/Domain_Specifications/SM-specification.csv

data-raw/SDTMIG_3.3/Domain_Specifications/SV-specification.csv

data-raw/SDTM_1.4/Associated_Person_Relationships.csv

data-raw/SDTM_1.4/Comments_Domain.csv

data-raw/SDTM_1.4/Demographics_Domain.csv

data-raw/SDTM_1.4/Events_Observation_Class.csv

data-raw/SDTM_1.4/Findings_About_Events_or_Interventions.csv

data-raw/SDTM_1.4/Findings_Observation_Class.csv

data-raw/SDTM_1.4/Identifiers_for_All_Classes.csv

data-raw/SDTM_1.4/Interventions_Observations_Class.csv

data-raw/SDTM_1.4/Pool_Definition_Dataset.csv

data-raw/SDTM_1.4/Related_Records_Dataset.csv

data-raw/SDTM_1.4/Related_Subjects_Dataset.csv

data-raw/SDTM_1.4/Subject_Elements_Table.csv

data-raw/SDTM_1.4/Subject_Visits_Table.csv

data-raw/SDTM_1.4/Supplemental_Qualifiers_Dataset.csv

data-raw/SDTM_1.4/Timing_Variables_for_All_Classes.csv

data-raw/SDTM_1.4/Trial_Arms_Table.csv

data-raw/SDTM_1.4/Trial_Disease_Assessments_Table.csv

data-raw/SDTM_1.4/Trial_Elements_Table.csv

data-raw/SDTM_1.4/Trial_Inclusion_Exclusion_Table.csv

data-raw/SDTM_1.4/Trial_Sets_Table.csv

data-raw/SDTM_1.4/Trial_Summary_Table.csv

data-raw/SDTM_1.4/Trial_Visits_Table.csv

data-raw/SDTM_1.4/Variables_Used_in_Associated_Persons_Data.csv

data-raw/SDTM_1.5/Associated_Person_Relationships.csv

data-raw/SDTM_1.5/Comments.csv

data-raw/SDTM_1.5/Demographics.csv

data-raw/SDTM_1.5/Domain_Specific_Variables_General_Observation_Class.csv

data-raw/SDTM_1.5/Events_Observation_Class.csv

data-raw/SDTM_1.5/Findings_About_Events_or_Interventions.csv

data-raw/SDTM_1.5/Findings_Observation_Class.csv

data-raw/SDTM_1.5/Identifiers_for_All_Classes.csv

data-raw/SDTM_1.5/Interventions_Observations_Class.csv

data-raw/SDTM_1.5/Pool_Definition_Dataset.csv

data-raw/SDTM_1.5/Related_Records_Dataset.csv

data-raw/SDTM_1.5/Related_Subjects_Dataset.csv

data-raw/SDTM_1.5/Subject_Disease_Milestones.csv

data-raw/SDTM_1.5/Subject_Elements.csv

data-raw/SDTM_1.5/Subject_Visits.csv

data-raw/SDTM_1.5/Supplemental_Qualifiers_Dataset.csv

data-raw/SDTM_1.5/Timing_Variables_for_All_Classes.csv

data-raw/SDTM_1.5/Trial_Arms.csv

data-raw/SDTM_1.5/Trial_Disease_Assessments.csv

data-raw/SDTM_1.5/Trial_Disease_Milestones.csv

data-raw/SDTM_1.5/Trial_Elements.xlsx

data-raw/SDTM_1.5/Trial_Inclusion_Exclusion_Criteria.csv

data-raw/SDTM_1.5/Trial_Sets.csv

data-raw/SDTM_1.5/Trial_Summary_Information.csv

data-raw/SDTM_1.5/Trial_Visits.csv

data-raw/SDTM_1.5/Variables_Used_in_Associated_Persons_Data.csv

data-raw/SDTM_1.6/Associated_Person_Relationships.csv

data-raw/SDTM_1.6/Comments.csv

data-raw/SDTM_1.6/Demographics.csv

data-raw/SDTM_1.6/Domain-Specific_Variables_General_Observation_Class.csv

data-raw/SDTM_1.6/Events_Observation_Class.csv

data-raw/SDTM_1.6/Findings_About_Events_or_Interventions.csv

data-raw/SDTM_1.6/Findings_Observation_Class.csv

data-raw/SDTM_1.6/Identifiers_for_All_Classes.csv

data-raw/SDTM_1.6/Interventions_Observations_Class.csv

data-raw/SDTM_1.6/Pool_Definition_Dataset.csv

data-raw/SDTM_1.6/Related_Records_Dataset.csv

data-raw/SDTM_1.6/Related_Subjects_Dataset.csv

data-raw/SDTM_1.6/Subject_Disease_Milestones.csv

data-raw/SDTM_1.6/Subject_Elements.csv

data-raw/SDTM_1.6/Subject_Repro_Stages_not_for_human.csv

data-raw/SDTM_1.6/Subject_Visits.csv

data-raw/SDTM_1.6/Supplemental_Qualifiers_Dataset.csv

data-raw/SDTM_1.6/Timing_Variables_for_All_Classes.csv

data-raw/SDTM_1.6/Trial_Arms.csv

data-raw/SDTM_1.6/Trial_Disease_Assessments.csv

data-raw/SDTM_1.6/Trial_Disease_Milestones.csv

data-raw/SDTM_1.6/Trial_Elements.csv

data-raw/SDTM_1.6/Trial_Inclusion_Exclusion_Criteria.csv

data-raw/SDTM_1.6/Trial_Repro_Paths.csv

data-raw/SDTM_1.6/Trial_Repro_Stages.csv

data-raw/SDTM_1.6/Trial_Sets.csv

data-raw/SDTM_1.6/Trial_Summary_Information.csv

data-raw/SDTM_1.6/Trial_Visits.csv

data-raw/SDTM_1.6/Variables_Used_in_Associated_Persons_Data.csv

data-raw/SDTM_1.7/Associated_Persons_Relationships.csv

data-raw/SDTM_1.7/Comments.csv

data-raw/SDTM_1.7/Demographics.csv

data-raw/SDTM_1.7/Device_Identifiers_Dataset.csv

data-raw/SDTM_1.7/Device_Subject_Relationships_Dataset.csv

data-raw/SDTM_1.7/Domain-Specific_Variables_General_Observation_Classes.csv

data-raw/SDTM_1.7/Events_Observation_Class.csv

data-raw/SDTM_1.7/Findings_About_Events_or_Interventions.csv

data-raw/SDTM_1.7/Findings_Observation_Class.csv

data-raw/SDTM_1.7/Identifiers_for_All_Classes.csv

data-raw/SDTM_1.7/Interventions_Observation_Class.csv

data-raw/SDTM_1.7/Non-Host_Organism_Identifiers_Dataset.csv

data-raw/SDTM_1.7/Pool_Definition_Dataset.csv

data-raw/SDTM_1.7/Related_Records_Dataset.csv

data-raw/SDTM_1.7/Related_Subjects_Dataset.csv

data-raw/SDTM_1.7/Subject_Disease_Milestones.csv

data-raw/SDTM_1.7/Subject_Elements.csv

data-raw/SDTM_1.7/Subject_Repro_Stages_not_for_human.csv

data-raw/SDTM_1.7/Subject_Visits.csv

data-raw/SDTM_1.7/Supplemental_Qualifiers_Dataset.csv

data-raw/SDTM_1.7/Timing_Variables_for_All_Classes.csv

data-raw/SDTM_1.7/Trial_Arms.csv

data-raw/SDTM_1.7/Trial_Disease_Assessments.csv

data-raw/SDTM_1.7/Trial_Disease_Milestones.csv

data-raw/SDTM_1.7/Trial_Elements.csv

data-raw/SDTM_1.7/Trial_Inclusion_Exclusion_Criteria.csv

data-raw/SDTM_1.7/Trial_Repro_Paths_not_for_human.csv

data-raw/SDTM_1.7/Trial_Repro_Stages_not_for_human.csv

data-raw/SDTM_1.7/Trial_Sets.csv

data-raw/SDTM_1.7/Trial_Summary_Information.csv

data-raw/SDTM_1.7/Trial_Visits.csv

data-raw/SDTM_1.7/Variables_Used_in_Associated_Persons_Data.csv

data-raw/SDTM_example_files/Harvard directory/ae.csv

data-raw/SDTM_example_files/Harvard directory/dm.csv

data-raw/SDTM_example_files/Harvard directory/eg.csv

data-raw/SDTM_example_files/Harvard directory/lb.csv

data-raw/SDTM_example_files/Harvard directory/mh.csv

data-raw/SDTM_example_files/Harvard directory/pe.csv

data-raw/SDTM_example_files/Harvard directory/vs.csv

data-raw/SDTM_example_files/generate_example_dataverse.R data-raw/SDTM_example_files/theoph_to_ex_pc.R data-raw/sdtm_terminology.R data-raw/valid_versions.R

data/sdtm_example_dataverse_ae.rda

data/sdtm_example_dataverse_dm.rda

data/sdtm_example_dataverse_eg.rda

data/sdtm_example_dataverse_lb.rda

data/sdtm_example_dataverse_mh.rda

data/sdtm_example_dataverse_pe.rda

data/sdtm_example_dataverse_vs.rda

data/sdtm_example_theoph_ex.rda

data/sdtm_example_theoph_pc.rda

data/sdtm_terminology.rda

data/valid_versions.rda

billdenney/Rsdtm documentation built on Dec. 7, 2022, 2:11 a.m.

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billdenney/Rsdtm
Study Data Tabulation Model (SDTM) import, export, and management assistance

Files in billdenney/Rsdtm
Study Data Tabulation Model (SDTM) import, export, and management assistance

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billdenney/Rsdtm Study Data Tabulation Model (SDTM) import, export, and management assistance

Files in billdenney/Rsdtm Study Data Tabulation Model (SDTM) import, export, and management assistance

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billdenney/Rsdtm
Study Data Tabulation Model (SDTM) import, export, and management assistance

Files in billdenney/Rsdtm
Study Data Tabulation Model (SDTM) import, export, and management assistance