preprocess_SDA: Preprocess SDA Results

In bimberlabinternal/ShinySDA: A shiny app to load and browse SDA objects.

Preprocess SDA Results

Description

This function preprocesses SDA results by filtering and summarizing the data.

Usage

preprocess_SDA(
  SDAres = NULL,
  QuantThr = 0.95,
  envv = NULL,
  TopN = 150,
  MetaDF = NULL
)

Arguments

SDAres	A data frame containing the SDA results.
QuantThr	A numeric value between 0 and 1 representing the quantile threshold for filtering the data.
envv	An environment or list containing the data used in the SDA analysis.
TopN	An integer value representing the number of top features to retain.
MetaDF	A data frame containing metadata for the samples.

Value

A list containing the filtered and summarized SDA results.

bimberlabinternal/ShinySDA documentation built on Feb. 5, 2023, 7:09 a.m.