Files in bioFAM/MOFA

Multi-Omics Factor Analysis (MOFA)

R/AllClasses.R R/AllGenerics.R R/FSEA.R R/MOFA.R R/PlotTrainStats.R R/QC.R R/calculateVarianceExplained.R R/clusterSamples.R R/compareModels.R R/createMOFA.R R/getMethods.R R/impute.R R/loadModel.R R/makeExampleData.R R/methods.R R/plotData.R R/plotFactors.R R/plotWeights.R R/predict.R R/prepareMOFA.R R/runMOFA.R R/setMethods.R R/subset.R R/utils.R README.md man/DataOptions.Rd man/Dimensions.Rd man/Expectations.Rd man/FeatureIntercepts.Rd man/ImputedData.Rd man/InputData.Rd man/MOFA.Rd man/MOFAmodel.Rd man/ModelOptions.Rd man/Status.Rd man/TrainData.Rd man/TrainOptions.Rd man/TrainStats.Rd man/calculateVarianceExplained.Rd man/clusterSamples.Rd man/compareFactors.Rd man/compareModels.Rd man/createMOFAobject.Rd man/factorNames.Rd man/featureNames.Rd man/getCovariates.Rd man/getDefaultDataOptions.Rd man/getDefaultModelOptions.Rd man/getDefaultTrainOptions.Rd man/getDimensions.Rd man/getELBO.Rd man/getExpectations.Rd man/getFactors.Rd man/getImputedData.Rd man/getTrainData.Rd man/getWeights.Rd man/impute.Rd man/loadModel.Rd man/makeExampleData.Rd man/plotDataHeatmap.Rd man/plotDataOverview.Rd man/plotDataScatter.Rd man/plotEnrichment.Rd man/plotEnrichmentBars.Rd man/plotEnrichmentDetailed.Rd man/plotEnrichmentHeatmap.Rd man/plotFactorBeeswarm.Rd man/plotFactorCor.Rd man/plotFactorHist.Rd man/plotFactorScatter.Rd man/plotFactorScatters.Rd man/plotTopWeights.Rd man/plotVarianceExplained.Rd man/plotWeights.Rd man/plotWeightsHeatmap.Rd man/predict.Rd man/prepareMOFA.Rd man/qualityControl.Rd man/regressCovariates.Rd man/runEnrichmentAnalysis.Rd man/runMOFA.Rd man/sampleNames.Rd man/selectModel.Rd man/subsetFactors.Rd man/subsetSamples.Rd man/subsetViews.Rd man/trainCurveELBO.Rd man/trainCurveFactors.Rd man/viewNames.Rd vignettes/MOFA.Rmd vignettes/MOFA_example_CLL.Rmd vignettes/MOFA_example_scMT.Rmd vignettes/MOFA_example_simulated.Rmd