scMT_data: scMT_data

In bioFAM/MOFAdata: Data package for Multi-Omics Factor Analysis (MOFA)

scMT_data

Description

A MultiAssayExperiment containing data from a single cell multi-omics study (scMT-seq) on mouse embryonic stem cells (mESCs).
The data set was originally published in https://www.ncbi.nlm.nih.gov/pubmed/26752769.
The MOFA analysis for this data set can be found in http://msb.embopress.org/content/14/6/e8124

Usage

data(scMT_data)

Format

A MultiAssayExperiment containing four Experiments:

• RNA expression: ExpressionSet with normalized expression values of the 5000 most variable genes

• Met Enhancers: Methylation values for 5000 CpGs overlapping enhancer elements

• Met CpG Islands: Methylation values for 5000 CpGs overlapping CpG Islands

• Met Promoters: Methylation values for 5000 CpGs overlapping promoters

Source

https://www.ncbi.nlm.nih.gov/pubmed/26752769

bioFAM/MOFAdata documentation built on July 5, 2023, 1:02 p.m.