Files in biobakery/banocc
Bayesian ANalysis Of Compositional Covariance
.Rbuildignore
.github/ISSUE_TEMPLATE/config.yml
.github/pull_request_template.md
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/banocc.R
R/banocc_model.R
R/data.R
R/get_banocc_output.R
R/rlkj.R
R/run_banocc.R
R/stan-output-evaluate_convergence.R
R/stan-output-get_credible_intervals.R
R/stan-output-get_min_width.R
R/stan-output-get_posterior_quantities.R
R/stan-output-get_pseudo_p_values.R
R/stan-output-get_snc.R
R/stan-output-make_list.R
R/stan-output-make_samples_list.R
R/stan-output-ps_function.R
R/stan-run-adjust_zeros.R
R/stan-run-get_IVs.R
R/utils.R
README.md
data-raw/make_datasets.R
data/compositions_hard_null.rda
data/compositions_neg_spike.rda
data/compositions_null.rda
data/compositions_pos_spike.rda
data/counts_hard_null.rda
data/counts_neg_spike.rda
data/counts_null.rda
data/counts_pos_spike.rda
man/banocc.Rd
man/banocc_model.Rd
man/compositions_hard_null.Rd
man/compositions_neg_spike.Rd
man/compositions_null.Rd
man/compositions_pos_spike.Rd
man/counts_hard_null.Rd
man/counts_neg_spike.Rd
man/counts_null.Rd
man/counts_pos_spike.Rd
man/get_banocc_output.Rd
man/run_banocc.Rd
tests/testthat.R
tests/testthat/test_0_stan_compile.R
tests/testthat/test_1_check_input.R
tests/testthat/test_2_get_IVs.R
tests/testthat/test_3_run_banocc.R
tests/testthat/test_4_get_banocc_output.R
tests/testthat/test_5_eval_convergence.R
tests/testthat/test_6_make_samples_list.R
tests/testthat/test_7_get_posterior_quantities.R
tests/testthat/test_8_get_credible_intervals.R
tests/testthat/test_9_calc_snc.R
tests/testthat/test_utils_adjust_zeros.R
tests/testthat/test_utils_rlkj.R
tests/testthat/testthat_objects/banocc_model_test.RData
tests/testthat/testthat_objects/generate_test_samples.Rnw
tests/testthat/testthat_objects/sample_data.txt
tests/testthat/testthat_objects/sample_stan_data.RData
tests/testthat/testthat_objects/sample_stan_fit.RData
vignettes/BAnOCC_Bibliography.bib
vignettes/Figure3.png
vignettes/banocc-vignette.Rmd
vignettes/banocc-vignette.md
vignettes/banocc-vignette_files/figure-markdown_github/traceplot-1.png
vignettes/banocc-vignette_files/figure-markdown_github/traceplot-2.png
vignettes/banocc-vignette_files/figure-markdown_github/traceplot-warmup-1.png
vignettes/lambda_behavior_figure.png
