Man pages for bioinf-jku/panelcn.mops
CNV detection tool for targeted NGS panel data
| control | GRanges object of countWindows with read counts for control... |
| countBamListInGRanges | Get read counts for a list of BAM files and given count... |
| countWindows | result object of getWindows - a data.frame with the contents... |
| createResultTable | Creates a user readable result table for the test samples of... |
| getWindows | Convert BED file into data.frame of count windows |
| panelcn.mops | Core copy number detection algorithm for targeted NGS panel... |
| plotBoxplot | Create box plot of normalized read counts |
| read.width | read width used for calculating RCs of test and control |
| resultlist | result object of runPanelcnMops - a list of instances of... |
| runPanelcnMops | Full copy number detection for targeted NGS panel data for... |
| splitROIs | Split (larger) ROIs into multiple smaller (overlapping) bins... |
| test | GRanges object of countWindows with read counts for a test... |
