| annoByCpG | Annotate the vector integrated site by CpG islands. |
| annoByGaps | Annotate the vector integrated site by gap information from... |
| annoByGene | Annotate the vector integrated site by genes and... |
| annoByRepeat | Annotate the vector integrated site by repeat sequences. |
| downloadDB | Download database files from public genome database server |
| drawingIdeo | Create a Ideogram(karyogram) object |
| makeInputs | Make an input table by BLAT/BLAST results |
| makeRandomSet | Random control distribution analysis |
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