column_cleaner: Modify Column Name for CSV file assuming mcmicro HistoCat...

In bioinfonerd/CyCif_Analysis:

Description

Modify Column Name for CSV file assuming mcmicro HistoCat output Takes the type of data, sample name and removes it from the column name for ease of reading and compatiability with Ajit's IMAAP Adds column for type of data and replacing the sample id column with names default for histocat's columns are: "Cell_[imagename]marker name" rename columns to reflect: ImageId = [imagename] Column = marker name Add column for what kind = Cell assumption is marker ids start at location 3

Usage

column_cleaner(tib)

Arguments

data	The tible object

Value

the modified tible object

Examples

column_cleaner(tibbleobject)

bioinfonerd/CyCif_Analysis documentation built on Dec. 1, 2019, 2:56 a.m.