filter_circ: Pre-standardization filter to select circRNA expressed in a...
In bioinformatist/ICE: ICE: Impute CircRNA Expression
Description
Usage
Arguments
Value
Examples
Description
return a subset of the circRNA expression dataset containing circRNAs that are expressed
in at least a specified percentage of samples based on a user-defined expression threshold
Usage
1
filter_circ(train.circ, cutoff = 95, threshold = 0)
Arguments
train.circ
an expression matrix with circRNA in columns, samples in rows
cutoff
percentage of samples in which the circRNA should be expressed
threshold
the numeric threshold defining expression of circRNA. Default threshold = 1.
Value
filtered circRNA expression matrix
Examples
1
New.mir <- filter_circ(GA.mir, cutoff=95, threshold=0)
bioinformatist/ICE documentation built on July 5, 2020, 12:20 a.m.
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Description Usage Arguments Value Examples
Description
return a subset of the circRNA expression dataset containing circRNAs that are expressed in at least a specified percentage of samples based on a user-defined expression threshold
Usage
1 | filter_circ(train.circ, cutoff = 95, threshold = 0)
|
Arguments
train.circ |
an expression matrix with circRNA in columns, samples in rows |
cutoff |
percentage of samples in which the circRNA should be expressed |
threshold |
the numeric threshold defining expression of circRNA. Default threshold = 1. |
Value
filtered circRNA expression matrix
Examples
1 | New.mir <- filter_circ(GA.mir, cutoff=95, threshold=0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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