plot_TERM: Plot a module identified by TERM.
In bioinfoxh/term: Identification of Translational Efficiency Regulated Modules with ribosome profiling data
Description
Usage
Arguments
Value
Examples
Description
Plot a module identified by TERM.
Usage
1
2
Arguments
TEmodule
a module identified by TERM.
layout_style
the layout style of the graph for the module, with the default value "layout.fruchterman.reingold".
gene2symbol
a file converting the original gene identifiers to alternative identifiers, with the default value NULL.
Value
visualization for the network of the input module
where the core and border colors of the nodes denoting differential expression of mRNA and RPF
and the square shape of the nodes indicating the significantly translated genes.
Examples
1
2
bioinfoxh/term documentation built on May 23, 2019, 6:06 p.m.
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Description Usage Arguments Value Examples
Description
Plot a module identified by TERM.
Usage
1 2 |
Arguments
TEmodule |
a module identified by TERM. |
layout_style |
the layout style of the graph for the module, with the default value "layout.fruchterman.reingold". |
gene2symbol |
a file converting the original gene identifiers to alternative identifiers, with the default value NULL. |
Value
visualization for the network of the input module where the core and border colors of the nodes denoting differential expression of mRNA and RPF and the square shape of the nodes indicating the significantly translated genes.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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