blup: blup

In biozhp/Phenotype: A Tool for Phenotypic Data Processing

Description

Performs the Best Linear Unbiased Prediction (BLUP)

Usage

blup(
  x,
  sample = NULL,
  year = NULL,
  loc = NULL,
  rep = NULL,
  phe = NULL,
  fold = 1.5
)

Arguments

x	Input phenotype data file.
sample	The column name of the sample name in phenotypic data. (Default: NULL)
year	The column name of the year in phenotypic data. (Default: NULL)
loc	The column name of the location in phenotypic data. (Default: NULL)
rep	The column name of the replication in phenotypic data. (Default: NULL)
phe	The column name of the phenotypic value in data. (Default: NULL)
fold	Fold before inter-quartile range. (Default: 1.5)

Value

Estimate BLUPs for a phenotypic data with outliers removed on a per sample basis.

Author(s)

Peng Zhao <[e-mail]>

Examples

data("wheatds")
blup_out <- blup(wheatds, sample = "Line", loc = "Env", rep = "Rep", phe = "DS")

biozhp/Phenotype documentation built on Aug. 8, 2020, 12:35 p.m.