Identification of Risk Groups in Pharmacovigilance Using Penalized Regression (RGP)

adal | Ridge Regression Wrapper |

all_classification_measures | All 'RGP' Classification Measures. |

ARTP | Pathway analysis approaches based on an adaptive rank... |

artp_prediction | Prediction based on the ARTP method |

artp_test | Test function for ARTP method. |

attribrisk.rgp | Calculate population attributable risk estimates for one or... |

cluster_size | Pathway sizes in terms of diseases and drugs. |

create_boolean_matrix | Create Boolean Matrix |

create_cohort | Simulate Case-Control Data with Correlated Predictors |

create_groups_leg | Random Grouping of Predictors |

create_groups_v1 | Random Grouping of Predictors |

create_groups_v2 | Random Grouping of Predictors |

create_square_matrix | Create Square Matrix |

dr2path | link drug to pathway |

drug2atc2target | find drug target: link drug to target ("pathway" or gene:... |

ds2icd | link disease to icd |

ds2icd2target | Find disease target: link disease to target |

find_intercept_iter | Find the Intercept for a Dataset |

Ilogit | Inverse Log of a Numeric Vector |

kegg_merge | Merge two data tables with the same key, usually kegg id |

matrix_to_collapsed_dt | Convert Matrix to Data.table |

parse_br08410 | get icd descriptions (all names) |

precision | Popular classification measures for predictions |

predict_groups | Compare Selected Groups versus True Groups Using Performance... |

rgp_auc | A Function Wrapper for 'ROCR' AUC Measure Calculation |

rgp_pr | A Function Wrapper for Area Under Precision-Recall Curve... |

riskscores | Calculate Risk Scores |

source2target | Fetch KEGG Entries using KEGGREST |

ttsplit | Split Cohort for Cross-Validation |

vector2list | Convert Vector of Groups into List |

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