README.md

HESDataExtracter

R package to extract relevant time series of ILI from retrospective HES Data

Contents

Package contains functions for: 1.Loading HES data and extracting the relevant fields. 2.Filtering data by ICD code. 3.Creating time series of weekly hospital admissions, which can optionally be organised by user-specified age bracket and/or hospital trust.

Still to incorporate: Functions for creating weekly time series of other outcomes (deaths, pneumonia, ventilation).

Installation

devtools::install_github('https://github.com/bjeffrey92/HESDataExtracter')

Usage

See demo/extractHESData.R for example script



bjeffrey92/HESDataExtracter documentation built on March 21, 2020, 7:01 p.m.