pcHeatmap: pcHeatmap, plot to quickly find PC correlations

In blackthornrx/rbnctools: Useful R Functions for RBNC

Description

Returns a PDF plot of PC by sample metric correlations. Automatically checks all numeric columns of colData(rse) against the top 10 principal components.

Usage

pcHeatmap(rse, pca, plotdir, width = 10, height = 10)

Arguments

rse	Gene RSE, holding phenodata and/or sequencing metrics in colData
pca	Object of prcomp() output, holding PCA information
plotdir	Path of directory to save the plot pdf
width	Integer width of plot, default 10
height	Integer height of plot, default 10

Value

Creates a PDF plot of PC by sample metric correlations.

Examples

# pcHeatmap(rse_gene, pca, getwd())

blackthornrx/rbnctools documentation built on Feb. 6, 2021, 12:27 a.m.