msigdb_geneset_metadata: Broad Institute MSIGDB Gene Set Metadata

In blaserlab/blaseRdata: Supporting Data for the blaseRtools Package

Broad Institute MSIGDB Gene Set Metadata

Description

Gene set metadata for the whole MSIGDB. Most gene sets are known by "STANDARD_NAME". You can filter the gene set list by supplying a named filter list to the bb_extract_msig function. The name of each list element should be one of the column names in this metadata table and the list element contents should be the values to filter for. Filtering works in an additive way, meaning if you supply a filter list with two elements it will extract gene sets passing filters 1 AND 2.

Usage

msigdb_geneset_metadata

Format

A data frame with 32796 rows and 18 variables:

STANDARD_NAME

character

SYSTEMATIC_NAME

character

HISTORICAL_NAME

character

ORGANISM

character

PMID

character

AUTHORS

character

GEOID

character

EXACT_SOURCE

character

GENESET_LISTING_URL

character

EXTERNAL_DETAILS_URL

character

CHIP

character

CATEGORY_CODE

character

SUB_CATEGORY_CODE

character

CONTRIBUTOR

character

CONTRIBUTOR_ORG

character

DESCRIPTION_BRIEF

character

DESCRIPTION_FULL

character

TAGS

character

Details

Use with bb_extract_msig

Source

https://www.gsea-msigdb.org/gsea/msigdb/ accessed January 12 2022.

blaserlab/blaseRdata documentation built on March 31, 2024, 6:51 a.m.