findModules.fast_greedy: Find Modules with iGraph Fast and Greedy algorithm
In blogsdon/metanetwork: Network meta analysis
View source: R/findModules.fast_greedy.R
findModules.fast_greedy R Documentation
Find Modules with iGraph Fast and Greedy algorithm
Description
This function wraps permutations of finding modules with
igraph::cluster_fast_greedy().
Usage
findModules.fast_greedy(adj, nperm = 10, min.module.size = 30)
Arguments
adj
A n x n upper triangular adjacency in the matrix class format.
nperm
Optional. Number of permutation on the gene ordering. (Default = 10)
min.module.size
Optional. Integer between 1 and n genes. (Default = 30)
Value
GeneModules = n x 3 dimensional data frame with column names as Gene.ID,
moduleNumber, and moduleLabel.
blogsdon/metanetwork documentation built on April 27, 2022, 3:53 p.m.
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View source: R/findModules.fast_greedy.R
| findModules.fast_greedy | R Documentation |
Find Modules with iGraph Fast and Greedy algorithm
Description
This function wraps permutations of finding modules with igraph::cluster_fast_greedy().
Usage
findModules.fast_greedy(adj, nperm = 10, min.module.size = 30)
Arguments
adj |
A n x n upper triangular adjacency in the matrix class format. |
nperm |
Optional. Number of permutation on the gene ordering. (Default = 10) |
min.module.size |
Optional. Integer between 1 and n genes. (Default = 30) |
Value
GeneModules = n x 3 dimensional data frame with column names as Gene.ID, moduleNumber, and moduleLabel.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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