Man pages for bmbroom/ISB-CGC-utils
Utilities for Creating NG-CHMs using the ISB CGC
| addClinicalCovariates | Add clinical covariates to chm |
| addMutationCovariates | Add mutation covariates to chm |
| defineClinicalCovariate | Define a clinical covariate for use in NGCHMs |
| demoCHM | Create a canned NG-CHM from ISB CGC cloud data |
| exprCHM | Create a canned NG-CHM from ISB CGC cloud data |
| getClinicalData | Get the specified columns from the clinical data for the... |
| getExpressionData | Get gene expression data from the ISB CGC cloud |
| getMutationData | Get mutation data. |
| removeClinicalCovariate | Remove a clinical covariate definition |
