getExpressionData: Get gene expression data from the ISB CGC cloud
In bmbroom/ISB-CGC-utils: Utilities for Creating NG-CHMs using the ISB CGC
Description
Usage
Arguments
Value
Description
This function downloads gene expression data from the ISB CGC cloud as
a gene by sample matrix. The data will be transformed using ASINH.
Usage
1
getExpressionData(cohort, genes)
Arguments
cohort
Include samples from the specified vector of participant ids.
genes
Include genes from the specified vector of HGNC symbols.
Value
A numeric matrix of genes (rows) by samples (columns).
bmbroom/ISB-CGC-utils documentation built on May 12, 2019, 10:24 p.m.
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Description Usage Arguments Value
Description
This function downloads gene expression data from the ISB CGC cloud as a gene by sample matrix. The data will be transformed using ASINH.
Usage
1 | getExpressionData(cohort, genes)
|
Arguments
cohort |
Include samples from the specified vector of participant ids. |
genes |
Include genes from the specified vector of HGNC symbols. |
Value
A numeric matrix of genes (rows) by samples (columns).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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