.Rbuildignore
          
        
          
            
            .gitignore
          
        
          
            
            .travis.yml
          
        
          
            
            DESCRIPTION
          
        
          
            
            NAMESPACE
          
        
          
            
            NEWS.md
          
        
          
            
            R/Launch.R
          
        
          
            
            R/addMask.R
          
        
          
            
            R/detectShifts.R
          
        
          
            
            R/drawPolygon.R
          
        
          
            
            R/extractCCC.R
          
        
          
            
            R/extractCCCTimeSeries.R
          
        
          
            
            R/getCL.R
          
        
          
            
            R/getCLArray.R
          
        
          
            
            R/gettmpdir.R
          
        
          
            
            R/parsePhenocamFilenames.R
          
        
          
            
            R/parseROI.R
          
        
          
            
            R/plotCLArray.R
          
        
          
            
            R/plotJPEG.R
          
        
          
            
            R/rasterizeROI.R
          
        
          
            
            R/writeROI.R
          
        
          
            
            R/zzz.R
          
        
          
            
            README.md
          
        
          
            
            cran-comments.md
          
        
          
            
            data-raw/.DS_Store
          
        
          
            
            data-raw/dukehw.R
          
        
          
            
            data-raw/example/.DS_Store
          
        
          
            
            data-raw/example/ROI/CLI.jpg
          
        
          
            
            data-raw/example/ROI/example_DB_0001_01.tif
          
        
          
            
            data-raw/example/ROI/example_DB_0001_01_vector.csv
          
        
          
            
            data-raw/example/ROI/example_DB_0001_roi.csv
          
        
          
            
            data-raw/example/dukehw_2015_01_01_120109.jpg
          
        
          
            
            data-raw/example/dukehw_2015_01_15_120109.jpg
          
        
          
            
            data-raw/example/dukehw_2015_02_01_120110.jpg
          
        
          
            
            data-raw/example/dukehw_2015_02_15_120110.jpg
          
        
          
            
            data-raw/example/dukehw_2015_03_01_120107.jpg
          
        
          
            
            data-raw/example/dukehw_2015_03_15_120108.jpg
          
        
          
            
            data-raw/example/dukehw_2015_04_01_120111.jpg
          
        
          
            
            data-raw/example/dukehw_2015_04_15_120111.jpg
          
        
          
            
            data-raw/example/dukehw_2015_05_01_120108.jpg
          
        
          
            
            data-raw/example/dukehw_2015_05_15_120110.jpg
          
        
          
            
            data-raw/example/dukehw_2015_06_01_120110.jpg
          
        
          
            
            data-raw/example/dukehw_2015_06_15_120109.jpg
          
        
          
            
            data-raw/example/dukehw_2015_07_02_120109.jpg
          
        
          
            
            data-raw/example/dukehw_2015_07_15_120110.jpg
          
        
          
            
            data-raw/example/dukehw_2015_08_01_120109.jpg
          
        
          
            
            data-raw/example/dukehw_2015_08_15_120110.jpg
          
        
          
            
            data-raw/example/dukehw_2015_09_01_120109.jpg
          
        
          
            
            data-raw/example/dukehw_2015_09_15_120109.jpg
          
        
          
            
            data-raw/example/dukehw_2015_10_01_120108.jpg
          
        
          
            
            data-raw/example/dukehw_2015_10_15_120110.jpg
          
        
          
            
            data-raw/example/dukehw_2015_11_01_120109.jpg
          
        
          
            
            data-raw/example/dukehw_2015_11_15_120108.jpg
          
        
          
            
            data-raw/example/dukehw_2015_12_01_120107.jpg
          
        
          
            
            data-raw/example/dukehw_2015_12_15_120109.jpg
          
        
          
            
            data-raw/example/filelist.csv
          
        
          
            
            data-raw/original/.DS_Store
          
        
          
            
            data-raw/original/ROI/CLI.jpg
          
        
          
            
            data-raw/original/ROI/example_DB_0001_01.tif
          
        
          
            
            data-raw/original/ROI/example_DB_0001_01_vector.csv
          
        
          
            
            data-raw/original/ROI/example_DB_0001_roi.csv
          
        
          
            
            data-raw/original/dukehw_2015_01_01_120109.jpg
          
        
          
            
            data-raw/original/dukehw_2015_01_15_120109.jpg
          
        
          
            
            data-raw/original/dukehw_2015_02_01_120110.jpg
          
        
          
            
            data-raw/original/dukehw_2015_02_15_120110.jpg
          
        
          
            
            data-raw/original/dukehw_2015_03_01_120107.jpg
          
        
          
            
            data-raw/original/dukehw_2015_03_15_120108.jpg
          
        
          
            
            data-raw/original/dukehw_2015_04_01_120111.jpg
          
        
          
            
            data-raw/original/dukehw_2015_04_15_120111.jpg
          
        
          
            
            data-raw/original/dukehw_2015_05_01_120108.jpg
          
        
          
            
            data-raw/original/dukehw_2015_05_15_120110.jpg
          
        
          
            
            data-raw/original/dukehw_2015_06_01_120110.jpg
          
        
          
            
            data-raw/original/dukehw_2015_06_15_120109.jpg
          
        
          
            
            data-raw/original/dukehw_2015_07_02_120109.jpg
          
        
          
            
            data-raw/original/dukehw_2015_07_15_120110.jpg
          
        
          
            
            data-raw/original/dukehw_2015_08_01_120109.jpg
          
        
          
            
            data-raw/original/dukehw_2015_08_15_120110.jpg
          
        
          
            
            data-raw/original/dukehw_2015_09_01_120109.jpg
          
        
          
            
            data-raw/original/dukehw_2015_09_15_120109.jpg
          
        
          
            
            data-raw/original/dukehw_2015_10_01_120108.jpg
          
        
          
            
            data-raw/original/dukehw_2015_10_15_120110.jpg
          
        
          
            
            data-raw/original/dukehw_2015_11_01_120109.jpg
          
        
          
            
            data-raw/original/dukehw_2015_11_15_120108.jpg
          
        
          
            
            data-raw/original/dukehw_2015_12_01_120107.jpg
          
        
          
            
            data-raw/original/dukehw_2015_12_15_120109.jpg
          
        
          
            
            data-raw/original/filelist.csv
          
        
          
            
            data-raw/procdata.R
          
        
          
            
            data-raw/resize.R
          
        
          
            
            inst/CITATION
          
        
          
            
            inst/app/app.R
          
        
          
            
            inst/archboldbahia-cli.jpg
          
        
          
            
            inst/dukehw-cli.jpg
          
        
          
            
            inst/dukehw-mask.tif
          
        
          
            
            inst/dukehw.jpg
          
        
          
            
            inst/example/ROI/CLI.jpg
          
        
          
            
            inst/example/ROI/example_DB_0001_01.tif
          
        
          
            
            inst/example/ROI/example_DB_0001_01_vector.csv
          
        
          
            
            inst/example/ROI/example_DB_0001_roi.csv
          
        
          
            
            inst/example/dukehw_2015_01_01_120109.jpg
          
        
          
            
            inst/example/dukehw_2015_01_15_120109.jpg
          
        
          
            
            inst/example/dukehw_2015_02_01_120110.jpg
          
        
          
            
            inst/example/dukehw_2015_02_15_120110.jpg
          
        
          
            
            inst/example/dukehw_2015_03_01_120107.jpg
          
        
          
            
            inst/example/dukehw_2015_03_15_120108.jpg
          
        
          
            
            inst/example/dukehw_2015_04_01_120111.jpg
          
        
          
            
            inst/example/dukehw_2015_04_15_120111.jpg
          
        
          
            
            inst/example/dukehw_2015_05_01_120108.jpg
          
        
          
            
            inst/example/dukehw_2015_05_15_120110.jpg
          
        
          
            
            inst/example/dukehw_2015_06_01_120110.jpg
          
        
          
            
            inst/example/dukehw_2015_06_15_120109.jpg
          
        
          
            
            inst/example/dukehw_2015_07_02_120109.jpg
          
        
          
            
            inst/example/dukehw_2015_07_15_120110.jpg
          
        
          
            
            inst/example/dukehw_2015_08_01_120109.jpg
          
        
          
            
            inst/example/dukehw_2015_08_15_120110.jpg
          
        
          
            
            inst/example/dukehw_2015_09_01_120109.jpg
          
        
          
            
            inst/example/dukehw_2015_09_15_120109.jpg
          
        
          
            
            inst/example/dukehw_2015_10_01_120108.jpg
          
        
          
            
            inst/example/dukehw_2015_10_15_120110.jpg
          
        
          
            
            inst/example/dukehw_2015_11_01_120109.jpg
          
        
          
            
            inst/example/dukehw_2015_11_15_120108.jpg
          
        
          
            
            inst/example/dukehw_2015_12_01_120107.jpg
          
        
          
            
            inst/example/dukehw_2015_12_15_120109.jpg
          
        
          
            
            inst/example/filelist.csv
          
        
          
            
            man/Launch.Rd
          
        
          
            
            man/addMask.Rd
          
        
          
            
            man/detectShifts.Rd
          
        
          
            
            man/drawPolygon.Rd
          
        
          
            
            man/extractCCC.Rd
          
        
          
            
            man/extractCCCTimeSeries.Rd
          
        
          
            
            man/getCL.Rd
          
        
          
            
            man/getCLArray.Rd
          
        
          
            
            man/gettmpdir.Rd
          
        
          
            
            man/parsePhenocamFilenames.Rd
          
        
          
            
            man/parseROI.Rd
          
        
          
            
            man/plotCLArray.Rd
          
        
          
            
            man/plotJPEG.Rd
          
        
          
            
            man/rasterizeROI.Rd
          
        
          
            
            man/writeROI.Rd
          
        
          
            
            tests/testthat.R
          
        
          
            
            tests/testthat/testxROI.R
          
        
          
            
            vignettes/Launch-xROI.R
          
        
          
            
            vignettes/Launch-xROI.Rmd
          
        
          
            
            vignettes/Launch-xROI.html
          
        
          
            
            xROI.Rproj