Man pages for bobverity/missdiva
Missing Data Imputation Via ARIMA
| check_missdiva_loaded | Check that missdiva package has loaded successfully |
| dummy1 | Dummy function |
| get_coverage_matrix | Extract coverage matrix from vcf object |
| get_missing_distance | Get pairwise missingness distances based on discordance |
| get_pcoa | Principal coordinates analysis (PCoA) on distance matrix |
| make_missing_matrix | Make a matrix of missingness using coverage matrix |
| missdiva | missdiva package |
| plot_coverage_matrix | Plot matrix of coverage for all samples and all loci |
| plot_locus_quality | Plot quality of each locus |
| plot_locus_quality_hist | Plot histogram of quality of each locus |
| plot_pcoa | PCoA plot |
| plot_sample_quality | Plot quality of each sample |
| plot_sample_quality_hist | Plot histogram of quality of each sample |
| rbetabinom | Draw from Beta-binomial distribution |
| rdirichlet | Draw from Dirichlet distribution |
| read_vcf | Read in vcf object |
| sim_biallelic | Simulate biallelic data |
| vcf_concat_crude | Crude method for concatenating vcfs |
