DoUnivariateOUwieDredge: Fit various BM1 and OU1 to a single trait, using measurement...
In bomeara/biosense: Functions for combining hyperspectral data with phylogenies and other traits
Description
Usage
Arguments
Details
Value
Description
Fit various BM1 and OU1 to a single trait, using measurement error
Usage
1
DoUnivariateOUwieDredge(data, phy)
Arguments
data
A data.frame with columns for species names, species mean, and species standard error
phy
A phylo object.
reconcile
If TRUE, use geiger's treedata() function to prune phylogeny and data to same leaf set
Details
The returned object includes the likelihoods, AIC, and AIC weights of BM1 and OU1, sigma for each,
alpha and theta for OU, and model-averaged estimates for sigma and alpha.
Value
A data.frame with returned parameters
bomeara/biosense documentation built on May 12, 2019, 11:34 p.m.
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Description Usage Arguments Details Value
Description
Fit various BM1 and OU1 to a single trait, using measurement error
Usage
1 | DoUnivariateOUwieDredge(data, phy)
|
Arguments
data |
A data.frame with columns for species names, species mean, and species standard error |
phy |
A phylo object. |
reconcile |
If TRUE, use geiger's treedata() function to prune phylogeny and data to same leaf set |
Details
The returned object includes the likelihoods, AIC, and AIC weights of BM1 and OU1, sigma for each, alpha and theta for OU, and model-averaged estimates for sigma and alpha.
Value
A data.frame with returned parameters
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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