Flimited: Compute a limited F-measure

In borishejblum/NPflow: Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data

Compute a limited F-measure

Description

A limited version of F-measure that only takes into account small clusters

Usage

Flimited(n_small_clst, pred, ref)

Arguments

n_small_clst	an integer for limit size of the small cluster
pred	vector of a predicted partition
ref	vector of a reference partition

References

Hejblum BP, Alkhassim C, Gottardo R, Caron F and Thiebaut R (2019) Sequential Dirichlet Process Mixtures of Multivariate Skew t-distributions for Model-based Clustering of Flow Cytometry Data. The Annals of Applied Statistics, 13(1): 638-660. <doi: 10.1214/18-AOAS1209> <arXiv: 1702.04407> https://arxiv.org/abs/1702.04407 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1214/18-AOAS1209")}

Examples

pred <- c(rep(1, 5),rep(2, 8),rep(3,10))
ref <- c(rep(1, 5),rep(c(2,3), 4),rep(c(3,2),5))
FmeasureC(pred, ref)
Flimited(6, pred, ref)

borishejblum/NPflow documentation built on Feb. 2, 2024, 1:51 a.m.