View source: R/RunDeconvExprFun.R
RunDeconvExprFun | R Documentation |
This function utilizes the estimated cell proportions from Step 1 as a fixed input and computes an average gene expression profiles of constituent cell types through a constrained least-squares using quadratic programming.
RunDeconvExprFun(Expression.Sample, Deconv_proportions)
Expression.Sample |
A R dataframe for the gene-centric gene expression (RNASeq) values of the tumor samples. |
Deconv_proportions |
A R dataframe with estimated cell proportions in tumor samples from output of the RunDeconvMethylFun() function. |
Created By: Banabithi Bose| Date Created: 4/10/2022 | Stage 2 | Function 1 |
A R dataframe with gene expression values in constituent cell types. The rows are the genes and the columns are the cell types. This function labels the columns as ,1, ,2,,3,....etc.
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