Man pages for bosefalk/CTUtools
Common R functions for DKMS CTU
| ASSIGN_KIR3DL1 | KIR3DL1/HLA-B Subtypes |
| CTUtools-package | CTUtools: Common R functions for DKMS CTU |
| datafolder_check | Check local data folder is up-to-date |
| datafolder_update | Save data folder content list to sync to git |
| hello | Hello, World! |
| HLA_B_class_data | HLA-B Bw4/Bw6-80I/T ligand classification database |
| HLA_B_classification | Classify overall group of HLA-B alleles |
| HLA_B_class_load | Load HLA-B Ligand Classification |
| HLA_C_class_data | HLA-C C1/C2 ligand classification database |
| HLA_C_classification | Classify HLA-C alleles into C1 & C2 groups |
| HLA_C_class_load | Load HLA-C Ligand Classification |
| HLA_Classification | Classify one HLA allele |
| HLA_Supertype | Assign HLA alleles to Supertype |
| KIR3DL1_3DS1_assignment | Classifies KIR 3DL1 & 3DS1 alleles into KIR3DL1-H, -L, -N |
| KIR3DL1_HLA_B_inhibiting | Classifies KIR3DL1 and HLA-B into strong/weak/no inhibiting |
| KIR_det_GCN | Determine KIR Gene Copy Number |
| KIR_first_field | Reduce KIR string to first field |
| KIR_haplotype_Cen | KIR Centromeric Haplotype |
| KIR_haplotype_Tel | KIR Telomeric Haplotype |
| KIR_present | KIR present/absent |
| NMDP | NMDP allele codes |
| score_boelen_inhib | Boelen inhibitory score |
| score_krieger | Krieger inhibitory KIR scores |
| score_rafei | Rafei inhibitory KIR scores |
| shorten_allele | Reduce HLA allele string to specified number of fields |
| Supertype_HLA_lookup | Superclass HLA lookup |
